FastQCFastQC Report
Tue 14 May 2024
EGAF00001010784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115198423
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT84752137.357056441649378No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10568440.9174118642231761No Hit
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG2121100.1841257844302261No Hit
ACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTC1905710.1654284798672982No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT1889890.16405519717921832No Hit
GTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGG1486700.12905558611683424No Hit
CGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCC1326870.11518126424352179No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1318760.11447726155070716No Hit
ATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCA1236400.10732785812528006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)