FastQCFastQC Report
Thu 23 May 2024
EGAF00001010785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115198423
Total Bases8.6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA52825694.585626141774528No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4525330.39282916225337566No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3156500.2740054870369189No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA1756380.15246562880465822No Hit
CTGCTCTGCACTCTCAGGTATTCCCTGCTCTTACTCCAAAAAGATGGACC1536520.13338029809661545No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1523670.13226483143784007No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC1305790.11335137808266699No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)