FastQCFastQC Report
Mon 13 May 2024
EGAF00001010787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90792977
Total Bases6.8 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15875831.74857467224585No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2217770.2442666903630663No Hit
CACATGCCTACCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC988440.10886745127874813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)