FastQCFastQC Report
Thu 23 May 2024
EGAF00001010819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134180182
Total Bases10 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42139653.1405271159939256No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5522800.41159580481117547No Hit
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG2612290.1946852330249485No Hit
ACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTC2095670.15618327302611648No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT1976540.14730491273293997No Hit
GTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGG1658760.1236218326190674No Hit
GATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCC1466950.1093268751118552No Hit
ATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCA1446220.10778193757405993No Hit
CGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCC1430110.1065813131778283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)