FastQCFastQC Report
Tue 14 May 2024
EGAF00001010827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79592389
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG1655510.20799853111583322No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT1575860.19799129286092923No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1455540.18287426954856198No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG1430210.1796918044513025No Hit
ACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTC1307370.1642581679512095No Hit
GTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGG1177940.14799656283718282No Hit
GGAGAATGGGGGATAGGTGTATGAACATGAGGGTGTTTTCTCGTGTGAAT1001120.12578087083175754No Hit
CGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCC993100.12477323679780487No Hit
GGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGTCCG945500.11879276547409577No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT939090.1179874120878568No Hit
AAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGGC862390.10835081228683813No Hit
GTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACT838040.10529147454036089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)