FastQCFastQC Report
Wed 15 May 2024
EGAF00001010828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79592389
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1237140.1554344599456614No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1194610.1500909842020196No Hit
GCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTC941790.11832664050327726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)