FastQCFastQC Report
Thu 1 Jun 2023
EGAF00001010946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31121319
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT594090.19089486534937675No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT470760.15126608226341565No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC427680.13742348131195853No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA378670.12167543412925395No Hit
CTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTTGT345900.11114567477040417No Hit
CTTATCGTCAGCCTTGCAGCACTTCTCTACAAAAGCTGCGAAATCATCCA334400.10745045863897991No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT321320.10324755194341217No Hit
CAAGGATTCTGTGCAGCATTTGGTGACTCTGTCACTTACTGGCGTTTTCT313230.10064804772574067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)