FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001010962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37410056
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT528860.14136840639853626No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC508720.13598482718122634No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA386480.10330912094865616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)