FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001010992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001010992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31536370
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC489730.15529054231669656No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT478710.15179616423830644No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA462100.14652922958476197No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT439270.13928996901038387No Hit
CTTATCGTCAGCCTTGCAGCACTTCTCTACAAAAGCTGCGAAATCATCCA397340.1259942092257289No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT376540.11939864987631742No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACGAGCTCAACAAGTGCAGTTT368270.11677628084652736No Hit
CTTGATTTGTCTCTCCTTCTCAGAAAGTGTGCATATATCTGCATGGAAGG346890.10999680686141114No Hit
CAAGGATTCTGTGCAGCATTTGGTGACTCTGTCACTTACTGGCGTTTTCT328550.10418129924274734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)