FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001011006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001011006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46493271
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACGAGCTCAACAAGTGCAGTTT801230.17233246505714775No Hit
CTTACTTTCAACAAAATCAGCAGCTAATGAAGGCAAGTCAGCAGGCATCT603420.1297865233014042No Hit
CAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACGAA497010.1068993403367984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)