FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001011020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001011020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29731162
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT497000.16716467388661094No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG490310.16491450956407286No Hit
AAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGCATCG385120.12953412315334328No Hit
GTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAA345710.116278670843743No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG317440.10677012893071586No Hit
CTTTAGTGTTGTGTATGGTTATCATTTGTTTTGAGGTTAGTTTGATTAGT308100.10362864391240409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)