FastQCFastQC Report
Sat 13 May 2023
EGAF00001011068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001011068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36257897
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT813130.2242628688586103No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACGAGCTCAACAAGTGCAGTTT676270.1865166090576075No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC642520.17720829203083677No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA520020.14342254874848367No Hit
CCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACA411890.1136000800046401No Hit
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC388080.10703323471849457No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA386330.10655058124303238No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT379720.1047275301157152No Hit
CGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAAAA363030.10012439496973582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)