FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001011069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001011069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36257897
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC638210.1760195854712699No Hit
CAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGCAA563640.15545303137686114No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT542620.14965567363159535No Hit
CACATTTAAAAGCATCTCAGCCTACCATGAGAATAAGAGAAAGAAAATGA497470.13720321396467092No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG449480.12396747665756787No Hit
GTGAAACACAAGCCCAAGGCAACAAAAGAGCAACTGAAAGCTGTTATGGA421850.11634706778498487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)