FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001075152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001075152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56262928
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATG3852360.6847066331137264TruSeq Adapter, Index 9 (100% over 49bp)
GAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTCT867210.15413524159283TruSeq Adapter, Index 9 (100% over 50bp)
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTAT839490.1492083739402969TruSeq Adapter, Index 9 (100% over 48bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC788950.14022554958391076TruSeq Adapter, Index 9 (100% over 50bp)
CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC699590.12434297767083861No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)