FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001104905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001104905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64511
Sequences flagged as poor quality0
Sequence length251
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA1846228.618375160825288No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG758511.757684735936506No Hit
CCTGTTTGCTCCCCACGCTTTCGCACATGAGCGTCAGTACATTCCCAAGG41596.446962533521415No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAA35155.448683170312039No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAG13622.1112678457937406No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG11761.8229449241214675No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG11131.7252871603292461No Hit
CCCGTTCGCTCCCCTCGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA8221.2742012990032707No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTACAGTCCAGAG8071.2509494504813135No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTGACGGCCCAGAG5880.9114724620607337No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACAGTCCAGAA4320.6696532374323758No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGT3870.5998976918665034No Hit
CCCGATCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA3430.5316922695354281No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCCGAA2620.4061322875168576No Hit
CCCGTTCGCTCCCCTGACTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA2340.36272883694253694No Hit
CCTGTTTGCTCCCCACGCTTTCGCACATGAGCGTCAGTACATTCCCAAGT2320.3596285904729426No Hit
CCTGATTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG2110.3270760025422021No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACAGTCCAGAG2090.32397575607260776No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAC2070.3208755096030135No Hit
CCCATTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA1850.2867727984374758No Hit
CCTGTTTGCTACCCACGCTTTCGCGCTTTAGCGTCAGTATCTGTCCAGTA1680.26042070344592394No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAAGCCAGAG1660.25732045697632966No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGTG1480.22941823874998063No Hit
CCTGTTTGCTCCCCACGCTTTCACGCATTAGCGTCAGTTGAGTTCCAGCA1480.22941823874998063No Hit
CCTGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA1330.20616639022802313No Hit
CCTGTTCGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACAGACCAGAG1250.1937654043496458No Hit
CCTGATTGCTCCCCACGCTTTCGCACATGAGCGTCAGTACATTCCCAAGG1190.1844646649408628No Hit
CCTGATTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAA1090.16896343259289115No Hit
ACCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA1080.16741330935809395No Hit
CCTGTTTGCTCCCCACACTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG1070.1658631861232968No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGATTTCGTCCAGAA1060.16431306288849964No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACAGACCAGAG930.14416146083613646No Hit
CCCGTTAGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA920.14261133760133932No Hit
CCCGTTCGCTCCCCTCACTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA890.1379609678969478No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTTTTCGTCCAGGG840.13021035172296197No Hit
CCTATTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG790.12245973554897613No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAT760.11780936584458465No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA710.11005874967059881No Hit
CCTGTTTGCTCCCCACGCTTTCGCACATGAGCGTCAGTACATTCCCACGG700.10850862643580164No Hit
CCCGTTCGCCCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA660.10230813349661298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)