FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001105637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001105637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81768
Sequences flagged as poor quality0
Sequence length251
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGGC997812.202817728206632No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG59417.265678505038646No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA58147.110361021426474No Hit
CNTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGGC25893.1662753155268564No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG23042.8177282066334017No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG20022.4483905684375307No Hit
CNCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA14631.7892084923197338No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGTC13641.668134233440955No Hit
CNTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG13341.6314450640837492No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCA10001.2229723119068585No Hit
CNTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG5450.6665199099892378No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA5440.665296937677331No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGTAACAGTCCAGGC5390.6591820761177967No Hit
CNTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG5230.639614519127287No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAAGC4600.5625672634771549No Hit
ACTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG3340.4084727521768907No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGT2880.3522160258291752No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAC2830.34610116426964094No Hit
CCCGTTCGCTCCCCTCGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA2590.3167498287838763No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCATGC2480.30329713335290087No Hit
ACTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGGC2430.2971822717933666No Hit
ACCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA2380.2910674102338323No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCACGC2380.2910674102338323No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTGACGGCCCAGAG2370.28984443792192544No Hit
CNTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGTC2200.26905390861950884No Hit
CNTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCA2070.2531552685647197No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGCA1820.22258096076704825No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCTACAGTCCAGGC1670.20423637608844536No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTTACGGCCCAGAG1580.19322962528128362No Hit
CCTGTTTGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG1490.1822228744741219No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCTACAGTCCAGTC1490.1822228744741219No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGTG1400.17121612366696018No Hit
CNTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGTAACAGTCCAGGC1380.16877017904314645No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCCACAGTCCAGGC1350.1651012621074259No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGCG1340.16387828979551902No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGTG1310.16020937285979847No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGCA1270.15531748361217101No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGCAACAGTCCAGTC1190.14553370511691616No Hit
CCTGTTCGCTACCCACGCTCTCGTGCATCAGCGTCAGTTACAGTCTGGTA1180.14431073280500928No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGGC1160.14186478818119558No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGCGCGTCAGCAACAGTCCAGGC1160.14186478818119558No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGCAACAGTCCAGGC1120.13697289893356815No Hit
CNTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTA1080.13208100968594072No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACAGCCCAGAG1080.13208100968594072No Hit
CCTATTTGCTCCCCACGCTTTCGCGCCTGAGCGTCAGCAACAGTCCAGGC1070.13085803737403384No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGCC1070.13085803737403384No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAC1010.1235202035025927No Hit
ACTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAG990.12107425887877898No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGTAACAGTCCAGTC980.11985128656687213No Hit
CCTATTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGCTACAGTCCAGTC940.11495939731924469No Hit
CCTATTTTCTCCCCACGCTTTCGTGCCTGAGCGTCAGCAACAGTCCAGGC920.11251345269543096No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGG860.10517561882398983No Hit
CCTGTTCTCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG850.10395264651208297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)