FastQCFastQC Report
Mon 13 May 2024
EGAF00001109962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001109962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences265465944
Total Bases33.1 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC21

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN16560680.623834445596532No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG3418650.12877923052909565Illumina Single End PCR Primer 1 (100% over 50bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)