FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001128994

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001128994
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGACCAGACAATGGCGGTTGTGGACCGGGGAAGCCGGGGCACTTCGG11.639344262295082No Hit
GTATTTGCTTTCCTTCTTCCCCTGTCCTCCCTGAGCCTCCACACATGTGT11.639344262295082No Hit
CTGACTTGACCTCATTTTCATGGCCCTCGAGAGTGGTTACACACTGTGAA11.639344262295082No Hit
CAATCTTCAGCTACCTAGACGCCACACTTCACTGCCAGATCACACTCTGT11.639344262295082No Hit
TCCCGGTAGGCCACGTGCATGACCACGAGCAGTGAGGGGCATGTCACCAG11.639344262295082No Hit
CTCAGGGCCAAGTGCTCACATCTCAGGTTCTGGGAGGAGTCTGGGAAGAG11.639344262295082No Hit
CTGTAGAACTTGTCGTCAACTCCATACAGCTCCAGTTCCATGCAGGAAGC11.639344262295082No Hit
CTGGGTCGGGGACCCTCACTTCTTCTGGGGTGTGCTCAGCTTCTGCATGG11.639344262295082No Hit
TCGCTCTGGCCAAATGTCTTCAACAAAGATGACTTCCCAGTCCGTCAGGG11.639344262295082No Hit
GGGCAGTTGAGTCTATTGCAAGAGCAGACCCCTCCCTGTCATCTGGCCAT11.639344262295082No Hit
CAGGTCAGGATATCTGAGTCAAGACCTGGGATCTTGCCTTAGCAATGACA11.639344262295082No Hit
TCCCTCCGTCCCTCCTTCCCTCCTTCCTTCCCAGGCCTTCTCTGACTACC11.639344262295082No Hit
GGAAGCGGGGACCCTTGGGAGCTGTCGGCTTCCCGGCAGAGGAGCAGGGT11.639344262295082No Hit
AAAGGCGTGATCCATAGTAAGTGCTCAATAATTGCTGTATTCCTAACAGA11.639344262295082No Hit
GGCCAGCTGCAAGTTGGGACGAAAGCTGCGACGTGTAAAGCTCTTTCGGC11.639344262295082No Hit
TTTGAGCTCTGAGAGACTTGGCTAGATGGAGGAGGGGAAGAAGATGCTCT11.639344262295082No Hit
TTAATGAGACAGACTGCTGTTTTCAAAGTAGGAAAGGAGAGGGGACACCA11.639344262295082No Hit
CCCACCTTGACCCTCATCCTATCATTTTCAGAGAAAACATTTGTCCAGAG11.639344262295082No Hit
TTGTGGCTTTTGAGTTTCATGCGCAGAAGGCAGAGGGGCAAGAAGTGGCT11.639344262295082No Hit
ACCATCCACAATGGCCATTGGTCAATGACCTACATTCTGTAAGTGCCTTT11.639344262295082No Hit
AGAAGGTGGAGGAGGTGTGGCACTGCGAATGTATCCCCAGCAACGACGAG11.639344262295082No Hit
AGGCCTTTCTTCCTCACCAAGTAGATGACACAGCAACTCCGAGCGGGATG11.639344262295082No Hit
TTATTCATCTTTGCACCTCTGGTATCTACACATTCCCCGACACCTGAGAG11.639344262295082No Hit
TGATAGCCCGCATCAGACCCGCAACGCGTGCTCTCGGGAACGCTGACCGG11.639344262295082No Hit
CGACGCTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCG11.639344262295082No Hit
AAAGTTAATTTGAAGTCTAGTCACAGGGAGGAATGACAATAACCCCTACC11.639344262295082No Hit
GTGAGGATCAAGAACTCAGTTTGAATGGACATGTTGTTGAGATGAGCCCA11.639344262295082No Hit
AGGGTCTGATAGAGAAACTGCTATCATGTTTTAAATGTCCTGCATCCACT11.639344262295082No Hit
GTCGGCCAAGACCTCCCAGAGGAGACCTGCCCAGCTGCCACCACCACCAT11.639344262295082No Hit
TGGGGTGGGTGGTGGGCCTAGCACACCTGGACTGGGACCAGCTGGAAGGG11.639344262295082No Hit
AAACAGTGCAGGAAAGTTAACTAGGCCATCATATCCAAAAAGGTCATCCA11.639344262295082No Hit
AAATTATCATAAATATAACTGTTCTTACAGTAACTAACACACTATACTTT11.639344262295082No Hit
CCTTCAACTGCAAGAATGGGCACAGAACTTAGGAAGGGCTGTCACTGGTC11.639344262295082No Hit
CATAAGCCTTGACTACCCCAGAGTGTGAGGGATTTTGTGGCCTGGTCCCA11.639344262295082No Hit
TCAGGGTCAGGGAGGTCCAGAACAGGGAGAAGAGAGGAAGAGGGAGCTGC11.639344262295082No Hit
TCACAGGTGGGACAGGAACAATCATCGGGGTCCAGGACAAGCAGGCACCA11.639344262295082No Hit
GCGGCAGCGCGAGGCCGGGGAGGGGCGCGGTGCGGGGCCGGGCTCCTGCG11.639344262295082No Hit
AATATTTGTCTAAAGACATAATGTGGTGAGGAGGTTAGAACTGTAGGTAT11.639344262295082No Hit
GACGTGTGGGTGCTCAGCTTGGGAGGGGAGGAATCGAGGCTGGATCCAGG11.639344262295082No Hit
CCCAGGCGGATCTGGAAAACGTCGCCGTAGCGCCGCGCCAGGCGAGCGAA11.639344262295082No Hit
GATCTCGCGCCCACACCCAGTGCTCTGGGTCATAAGCCTGGATCTGGAAA11.639344262295082No Hit
AGAAATAGAAATAGGGACAAAGGAGGGGAAAATGTATATATTGGGGCTGG11.639344262295082No Hit
ATGGCACCCGTCACTGTGGGTGGCAAGATAGTGGGCTCTCTGTGTGCCAT11.639344262295082No Hit
CACCGCCATTTTCCTCTTACCTCAAAAACCACCTCTTCGTCAAACTCCGG11.639344262295082No Hit
CATCTGCCTCGTCCTGGACTGCCTCTGTGCTCATGACTTCAGCGATAAGA11.639344262295082No Hit
GCGGCTCCGTGCGTTTTGGGCCGGGGGTCGCTTTTCGCGCGCCCAGCATT11.639344262295082No Hit
TGCGCTTCTCCTGCAGCGTCCGCATGGCAGGCAGGCCGCAGGGTCGCTTC11.639344262295082No Hit
ACCTTTTTCTGCTGGCAGTGAGCTAGTCTAGTGGGCTGGCTGTTTAAGAG11.639344262295082No Hit
TTAAGATTAGGAAACAAAGAGAAGTCAGAAGGAGTCAAATCAGGACTGTA11.639344262295082No Hit
GATGCGGAGGCAGGAGGAGATGATGTGGGAGAAGGAGGAGAAGATACGGG11.639344262295082No Hit
TCCAGCTCGGAGCGTCTGAAGATCCAAAAAGAACAAGTCAGACTCCCTGT11.639344262295082No Hit
AAATGATCCCCATTTATAGTTTTTGTAAAGTACAGCATTAGAGTGTGGCT11.639344262295082No Hit
CAGGTGCCCACTGGCTTACTGGGGCACCCTCCACTGCAGGGTAGGGGCAG11.639344262295082No Hit
ACTTCACCGCTGCAGGTCCTGGAGAAACTGCAGGGACACCTTGAACTGCT11.639344262295082No Hit
GGCCTCTTGTTCATCTCTGCCTCTTATCTCCTTTGCCTGCTTTCCTTTTT11.639344262295082No Hit
GAGGCTGGCTTGCCCTCACTTTGTGGCTTTTCCTCACCTTCAGACCTGCC11.639344262295082No Hit
CCCAGGAGCAGGTGCACCCAGGTGGTGGCCTGGGCTATAAAGCTGGCCCC11.639344262295082No Hit
GTCTCACCTTAGGCAATATAAAGTCCTGGTTCACTCTCAGGAACGAGAGC11.639344262295082No Hit
GCTCCTCGGGAAGCCTCCCACCTCAGGGGCAGCCTATCTATCCCCAGCAC11.639344262295082No Hit
GCGGTGGCCACATCCCCAGGGGAAGAAGCAGAGACCAGGAAGCCTGGCTG11.639344262295082No Hit
ATAGGTATCTCAGTTATTAGATTCCTGAATTGATAGCTGCTGCTCTAAGC11.639344262295082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)