FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001129882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001129882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTTATTGCAATGTACAGATTACAGTTCAGTTAAATGTCCAAGAAGAAA23.389830508474576No Hit
AAATGATGGGAATTCCTTTATGACTCTGCAGTGGTCCCTCCGTGTCTGCT23.389830508474576No Hit
AAGAAAGAAGATCTGAATGACAAAGAGAAAAAAGATGAAGAAGAAACTCC11.694915254237288No Hit
TGCGTTATCCTCACCTTCAAGGAGCCCTTTGGCACTGAGGGTCGCGGGGG11.694915254237288No Hit
TAAGGTAGATGGACTCAGGGTAAGGATAGCTACAGCTGTGTGGGGCTGAA11.694915254237288No Hit
CCTCCCACATCTTCTTGGATGGGTCGGAGGTTACAGTCTCTTTCAGCTCA11.694915254237288No Hit
CAGACGCCATGCACCCTCCGGTGAGTCTTGTGGGTTTGATAGGGGTGGAG11.694915254237288No Hit
TTTGTGGGACGACAAAAAAAGGCTGTTTGGGACCCGCCCAACCCTTCCCC11.694915254237288No Hit
TTGAGACAGGGTCTCACTATTGCCCAGGCTGGAGTGCAATAACACGATCA11.694915254237288No Hit
CCTTCCCGCACCCCGAGCGGCCCGGAGGCGCCGTCCTCTTCACTGGCCAG11.694915254237288No Hit
AAGTGGCTGCAACTGTGTCGTGATAGTTAGTAATGTCTGCTGTGGACAGA11.694915254237288No Hit
CCCACATGTTAAGAGCCCATTCGGGGCAGCACATTAGGGGCAAACAGCCT11.694915254237288No Hit
TAAACCCCTGAGTCACCTGGGAAAGTAAGAAAAGATTAATATCTGATAAA11.694915254237288No Hit
CAAAATTTGTTTTTGTGGAACCACTTGAATGGAACACAAGTTTGGCGCCC11.694915254237288No Hit
TGGCTCATCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGTCCCCCAGGA11.694915254237288No Hit
AGAAAAAGAAGAAAGACCCAGAGACATATGAAGTGGACAGTGGTACCACA11.694915254237288No Hit
GAATAACCCTGCAGGTTTATCTCACTTGTTTCTTGTTTCCCTTTTGAACC11.694915254237288No Hit
AGAATGACATCATACATGGCATTTATAATGATTTATATTTGTTAAAATAC11.694915254237288No Hit
ATGTCACTTTCTCCCTTTTGAGATTTGAATCCTGCCTCTTCATAGCTTTT11.694915254237288No Hit
TAAGAGGGTGCTAAGAAATATTTGTGATGAAAATAGGCATTGGTAGAGTT11.694915254237288No Hit
CTCTCTAAGGCTGACTTTGTATACATCCTGGCTAAAAACTGGGGCATTAT11.694915254237288No Hit
AAGACGCCGGTGAGCAAGTGCGAGATATCTTGGGTGCGCAGCGAGGAGGG11.694915254237288No Hit
GTTTCTTCCTGATATGTACTGTTGGTTAGATCAAAGATGAAAAGATTAAA11.694915254237288No Hit
TTGAGTAGAAGCGGTAGGACTCCTGTCGCTCCAACACTGCCTTGAGCTCA11.694915254237288No Hit
CAGAGTGCACAGGGAGGGTCAGAAGTGCCAAGTCACTGGCCGTTAACTCA11.694915254237288No Hit
TGAAAACTTTTGCCATTGAATCACTCTGTATTCAAAGTTGTGCCCCATTC11.694915254237288No Hit
TGGGAGGGAGAACAGTAGCAGGCAGGGTTTGCAGGAATGAGAAACTGATA11.694915254237288No Hit
CGTCAAGGGCCACCCCACCCCCACCCGGGACGCCGCGCTCCTCACCAGCT11.694915254237288No Hit
CACGGACTTGGCTCCTTTAAAGGGGATTCTCCGGCGGAGGCAGCTATACT11.694915254237288No Hit
CTAAGGTGGGGCCGGTGCAGGGTGTGGGTACAGTGTCTGTGTGAGTCAGT11.694915254237288No Hit
GTTGGAAGTTACAATTTCCAGGTAGGCCAGGTAGGGGCGGGAATGTGGCT11.694915254237288No Hit
CCGCAGTGCTCAGCCGAGTGTGGGACGGGAATCCAGCGGCGCTCTGTGGT11.694915254237288No Hit
AGCTGGGTAGTGAGGCCATGGACCAGTTCCGGGAGGATGAAGGCTTCATC11.694915254237288No Hit
GCAGTGATGTACCAGAGCGCGTCTTCCACCTGTCAGCCTTTCGCCACCCG11.694915254237288No Hit
CAAAGACATCCTGAGCCATATGTGGCCTGTGGTCCACGGGTTAGACAAGC11.694915254237288No Hit
CTTACTGAGCCTATATAAACTTTCATTAGATAGAAAAATAACAAAGATTT11.694915254237288No Hit
CATAAGCCAGTATCTCTATTTCAACAGCCAGAACTACCGCCTTACCTGTA11.694915254237288No Hit
CAAGAAAACAGGTTGGGAATGGTTCCCACGTGGGGCAGACTGTTGGTGTA11.694915254237288No Hit
TAGAGCCTCTGCCTCCTGGTTTTTGGCTTTTTATAAGACCTAGAAAGAGG11.694915254237288No Hit
TGAGGAATAGTCGTGTCTAGCTTCTGACCTGGGAAATGGCAAGAGGGCTC11.694915254237288No Hit
CAAATAGGAGTAGTGAAAATGTGTATATGAGGACTCTGCATGCAGTTTCT11.694915254237288No Hit
GATCAAGTTGGATTTAGATGATGTTCCCTATAAATCCATTCTCCTCTCCC11.694915254237288No Hit
CATACATCAATGCCTCCCTGTGAGTCATGCTGTCACAGAGGTGCGGTGGC11.694915254237288No Hit
GTAAGACTCGGGTGCCCCCCACCAACGAAGGGGGGGAGGCGGAGCCAACG11.694915254237288No Hit
TAAGACTCAGCAATTGACTATGTTTCCAATATGACCTTTATTGAGCAAGT11.694915254237288No Hit
TCCTTCTCCTGCTCCTCCCTGCTCCTTCCCCCTGCTGCTTCTCCCTGCTC11.694915254237288No Hit
AAACTGGAACGTCCACAATGGCTCCTGGCCTCTTCACTATATCTCCTTCC11.694915254237288No Hit
AGGGCGACATCCTGTACACCATGTACATCCGACAGACGGTGCTGAAAGTG11.694915254237288No Hit
GGAGCACGTGCAACTCGCTCCTGGTCTTTTCTCTGCTGCTGCTGCTGCTG11.694915254237288No Hit
TGTCCAGTCTTCACATGGAAAGCTTGTTTATACTGGCAGATGCTCCTGTA11.694915254237288No Hit
CCAGGGTCTTCACAGGTCTCTATGGTGATGGTCGCAGGAGACCCATTCAC11.694915254237288No Hit
ATAGCCGTAAGGAGGTAACACTAACCTGGAACTCTTTCTGAACATTTAGG11.694915254237288No Hit
AGAATGACAGGCACGGTGACGCCGCTCTTTTCACAAGAACAGATGATGCA11.694915254237288No Hit
CCACTTTCTGAGACTTGTGAAGAGATCTCTTCTGATGCTTTGACAGTCAG11.694915254237288No Hit
CTGTTCTTTTAGTGACGAATCTCTTGACATGTGACTGGGATGATTTTGCT11.694915254237288No Hit
ACCGGTGGGAATGACTCTCATCGTCAGTGCAGGAAACGAAGAAATAATGT11.694915254237288No Hit
AAGATTTTCCACCATTGAAGAAGCTTCATTTGCATCTACTTCTTGAAAAC11.694915254237288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)