FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001129883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001129883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACATGGATGAGTTCAACTGGGTGTCCAGGCTTGTGTTAGAGGGCCGCAGG22.4691358024691357No Hit
CCCAGGGGTTCCGTAGCTTGACGAGATATTCAGGTCTATGTTTGCAGGTC22.4691358024691357No Hit
TTTTTTTTCTTTTTTGAGACATACTCTTGCTCTGTCACACAGGCTGGAAT11.2345679012345678No Hit
GTGGCTGTCCACCTGCCGCGTGCGGTTCTCCACCAGCTCCACCATCTGGC11.2345679012345678No Hit
TGATTTATCAAGATTGTGAAACTTTGTAGCACAGTCAGAATTGGGGAGAC11.2345679012345678No Hit
GCATCGGATGAGTTGCAGACCCAATACTGCTTCTGAGCTTCAGTAAATAT11.2345679012345678No Hit
CTGACTGGCTGGGTGGCCTGGCTGACTTGGCTGGCTGGCTGGCTTGGCTG11.2345679012345678No Hit
CCAGGAGCACCAGCTGGGGAACAACACCCTCTCCAGCCACCTCCAGATCG11.2345679012345678No Hit
CACAGCCAAGACTGTTCACTCTTAGTGGACTTGACTGACTCTGGGCACCA11.2345679012345678No Hit
ATTTTCATTTTTCTGATTAACAGGCAAGGCTCAATATCCTAATAAAAGTA11.2345679012345678No Hit
TTGTAGGAGATTTTCACCATCCTCACTGGGCACAGGTAAGTCCCAAACAT11.2345679012345678No Hit
GTTTGTTTAAGACATCATCTCGTTTTCATTGAAGCTGTCTCACAGCTACC11.2345679012345678No Hit
ATTTTATTCTGTAGGACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCT11.2345679012345678No Hit
GGAGGCCACCCTGGAGGAGGCAGGCCCAAGCCCCCCAACCTTCCACTGTG11.2345679012345678No Hit
CCTCCAGCGTAACCCTACAGTCCCCTACTCACCACACCTAGTGTAAGGAG11.2345679012345678No Hit
CCCCTTCAGGTATCTACTGAGCGTTTCAGTCAACAATACAGCTCGTGTTC11.2345679012345678No Hit
TTCACCTTTATTGAGAAGTGTAACAACCCTCGTTCTGTCACATTATTGAT11.2345679012345678No Hit
AGCAGTGGTGATGGGGTGGCCATAAGAAGGAAAGGGGAGAGTTAGAGTCG11.2345679012345678No Hit
AAGAATCATTAGCTTCTTTGGTTCTGTCTTAAAAGGAATGAAAATTATTG11.2345679012345678No Hit
CCCCAGGGGCCCTGCGGCCCAAACCTAGGGCTGGGAACCTGTCCAACCGT11.2345679012345678No Hit
TGCTGGTTGGTGTCGGGGTTCCCGTCGTCTTCATCATCATCCTGGTACTG11.2345679012345678No Hit
CTTTGGTTGCTCCTCGCAGTGGGCGTCTTTGACTGGGCAGGGGCTTCGGA11.2345679012345678No Hit
AGATCACTGCATCTGCCTATACAATCTTTACTGATAAAGACTCAAGGCCC11.2345679012345678No Hit
GCCGCTGGCTGCTGGGGCTGGGGCAGCAGTTGGGTGCAGATCCCCGAAGC11.2345679012345678No Hit
AAAGCCAAGATCACGACCAGGATACTGCTGTACTCTCAGCATCCTCCCTG11.2345679012345678No Hit
AGGACCTGTCATCATCTCAATTCCTAAGTGAGCAAGGGGGCAGAGGTGGG11.2345679012345678No Hit
AGTGCCTGGCACAGAGGAAGCCCTGTGTGAGGATTCACCATGTTCAGATG11.2345679012345678No Hit
TGAATTGAGTGCTGATATTTGATTGGCTTATCGCGCACCTGATGAGTGGG11.2345679012345678No Hit
GGGTGGCTGTGTGGAGTTGAGATTTAGAGCAATGCGCTGCTAGGGAGCTA11.2345679012345678No Hit
CGTGCGGGTGCCTGGTGACCCGGGGGCAGCCTGGCAGGGCGCAAGGCACT11.2345679012345678No Hit
GGCTGCAAAAGGGGGAGCCTAGCTCCTACAGCAGGCGTAGGGAGGTGGGG11.2345679012345678No Hit
ACGCGTGCTCTCGGGAACGCTGACCGGCGACACACTTCGTAGCGGGACAG11.2345679012345678No Hit
CACAAACCACTATCAATTGTCAATTCTACTTAGGTATCGGCGGATTGTGT11.2345679012345678No Hit
GCTAATTTTTGTATTTTTAGTAAGACAGGGTTTCACCATGTTGGCCAGGC11.2345679012345678No Hit
CACACTGGCCTCTCTCACGCTGAGGGAGGTCAGCGTGAGCCCCTGCCTCA11.2345679012345678No Hit
TAGATTCTCCAAGAAGAACTGAGGTTGTGGAGCGGGCAGGTAGGACTATT11.2345679012345678No Hit
TGGGGTGGGTGGTGGGCCTAGCACACCTGGACTGGGACCAGCTGGAAGGG11.2345679012345678No Hit
GCATTCTTGTGTGCTTGCATCTCATGGAACGCCATTTCCCCAGACATCCC11.2345679012345678No Hit
TGGTTCCTCTCCTCCTGCCTGGTGTCTGCCATTAGCATTGGAATAAAGTT11.2345679012345678No Hit
TACGATTTCTTTGTACTTGTAAAATATCATTGCACGTTGAATAGGAGTCT11.2345679012345678No Hit
TAGCAAGGGAGCAAAATGGAAGGAATAGTATTACTAGAAAACAAATAAGA11.2345679012345678No Hit
CTGCCATTCCCACCTCTGCACCCATCCCGGCCTCCTTCAGTTTGAGTAGA11.2345679012345678No Hit
AGCCTGGCCATCATGGCCAAACCCTGTTTCTACTAAAAACAGAAAAATCA11.2345679012345678No Hit
GCGCCCATGCAGAGTGGGTGTTCAACAGACACCCAAGCCTGCCAATCTCT11.2345679012345678No Hit
CCCCATCCCCAGAGATAAACATGTATGAATGAACTTACGTGATAACAACT11.2345679012345678No Hit
ACCTCGATCCTAGCAGTGCTGAGTTCTTCCTGCAAGAAGAGAGACTGACA11.2345679012345678No Hit
AGGGCAGGGCTGGGCGGGGTGGGGGCTGTCCACATTTCCGTTCTTTATCC11.2345679012345678No Hit
GCCACACACAGGAGCCACATTGCTTCCATGATGGGTAAGCAGCACTGAGC11.2345679012345678No Hit
CCATGGGACAAAGGAACCAAGCCTAGAACCAAAACTGTTCTTAGCTTGTT11.2345679012345678No Hit
GTCTTAGCTCCTTGACGTTTTTCAATCAACTTCTCTGTTGGTGACCCTGT11.2345679012345678No Hit
AGCTTGACTCTTAATGGTGAGCAAGGCAAATGAGGCAGACAGGTGGAGGG11.2345679012345678No Hit
CTGTCACCCCCGCAGGCGTGTCCACGCACACACGCCACATGCACAGTTCA11.2345679012345678No Hit
ACATTCACAGCCTTGCTCCAGGATCAGTGGCCAAGATGGAGAGCAACCTG11.2345679012345678No Hit
CCCACTCCGACCCTACCCGGCCGAAGGGTTCCGCTGGACACGCAGGCGGC11.2345679012345678No Hit
CCTGAACATCCAGTCCTGGAGCAACTACTCCTGGAACACTCAGACCTGGT11.2345679012345678No Hit
CTGGTCTCAAACTCCTGACCTCAGGTGATCAACCCACCTTGGCCTCCCAA11.2345679012345678No Hit
GTCCTGATGTTACGTTTAAGGAACACGATCAGTTTGTGGGATGCCAGCCT11.2345679012345678No Hit
CATCTGCCTCGTCCTGGACTGCCTCTGTGCTCATGACTTCAGCGATAAGA11.2345679012345678No Hit
AGCCCGTAGCCCCTTTTCCTGGTAGTGATTGGACCCTGTAGCCCCTTTTC11.2345679012345678No Hit
TTCCAGATGTGTGGCCTCTGCAGAAGCACCGTCACCCATGGGGCAGGACT11.2345679012345678No Hit
CTTGCTTTCCTCGGAGCCGCTTTCTGCTGCCGGGCGGCGAGTCTTACCCT11.2345679012345678No Hit
GTTTCCATTTAGTCAGTCAACTGTTTCTGGCTCTCTCAATTGGGATAGAT11.2345679012345678No Hit
CCCCTCCCTGGCCATTGTTATCCCAGGAGGAGACACTGTGGGCACAGGGC11.2345679012345678No Hit
GAAACAAGTTTAGAATACCTGGTTTATTGGGAAAACTTCATAATGAAAAC11.2345679012345678No Hit
TTGTATTGAAGAGATTCTCCGATGTCACAGGCAACAAGATTGCCAAGAAT11.2345679012345678No Hit
ATGCTTTCTAAAAACAGAAATCTGAAATCTAATAATACAACATAAATCTA11.2345679012345678No Hit
ATCTCATTTAGATATTCTGATATACTCTTAACCATACTGTACTTTGAGTT11.2345679012345678No Hit
CAGATGTTGACATCAGAGGGCCCAAAGTGGACATTGATGCCCCAGATGTG11.2345679012345678No Hit
TATTGGGCTGTGGCTGTGAGCCATGTGCTCTGGTGACTCAGAGCAGGGCC11.2345679012345678No Hit
TAAGGAAGACTCGGGCAATCCACAAATCTTACACTCTAGTCCATCGATGA11.2345679012345678No Hit
CCCTCCTCCGGGCCACCCCTCCATAACCACAGCCAGCAGCTACACCTTCT11.2345679012345678No Hit
TACCCTCCCCTCCCTATATTCCCTTCCCCTCTGTTCCCCTCCTCTCCCCT11.2345679012345678No Hit
TGGTTTCTCAACCCATCCCTTTTTCTACCAGAAACCTCCTACACATCCCT11.2345679012345678No Hit
CTGACTGGCTGGGTGGCCTGGCTGCCTTGGCTGGCTGGCTGGCTTGGCTG11.2345679012345678No Hit
GATTCACAGAAAAGCAGTGTAAGTAGTAAAACAAAAATATTGCTTTCACT11.2345679012345678No Hit
GAGCTCTGGGCACACTGGCAAATGTAGTGACCTCCCTTGCCAACCTAAGT11.2345679012345678No Hit
CACCATTGGCCTGTCAACCCACCCATTGGCCTGTCTGCTGGGTGCTAACA11.2345679012345678No Hit
TGGCCGGCGTCCAGTTACCTGCAGCATGTTGAGGAGCAGGCTCCGGAACT11.2345679012345678No Hit
CATGGATGGTCAGTATTTTGGTCTACAGACAACTTCAACTTGTATCATTA11.2345679012345678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)