FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001129884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001129884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGCAAGCCAAGCCACCCAGCCAGCCAGACAGCCAACCCAGCCAAGCC22.4691358024691357No Hit
CCTAGGTCTCACAGCTTGTAAGTACAAGAAGCAGAGCCACTTTCTCCTCT22.4691358024691357No Hit
TTTCCGCTCACCTTCATCAGCCCTGGGTACTCTCCTGTGGGCAGTCCGTA22.4691358024691357No Hit
ACAGTTAAAATTTGAAAGAAGACAGATGAGCAGGGTCATTGTAACAATTT11.2345679012345678No Hit
GCCAGCAGCGGATGGGCACCTACGGGGTGCGAGCGGCTTGGAGGAGGCTG11.2345679012345678No Hit
GGACAACGCAGAGGAGGTAAAGATAAAAACAACACAAGCCGTGGACAGGC11.2345679012345678No Hit
GAAAAGGGGCTACGGGCTCCAATCACTACCAGGAAAAGGGGCTACGGGCT11.2345679012345678No Hit
CCAGGTGAGGAGCCGGGAGCCGTGCGCTTAACGGCGGGATTTGGGAACCC11.2345679012345678No Hit
CAATATGGTTGGAGAAGGTACAGAGTGGGGAGAAATATGGTGGAGCTGTG11.2345679012345678No Hit
CCCATACTTGCCCCTTTCCCTGTCTGCCCAGACTTACTCTACTCTTGGTA11.2345679012345678No Hit
CGGCTGGCGGGCGGCGACTGGTTCACCTCCCGCACCTCGGCCTGCGGGCC11.2345679012345678No Hit
CAAAACAGGGTGTTACAAGGACAATCAAGGCAGCTTGCAGGGATGCCTTT11.2345679012345678No Hit
TTATGCATGAGGAATGGAAGTACCCACAGATGAAGTGACTTGCTTAGGGT11.2345679012345678No Hit
ATGTGAAGTTCCTTATCCAGTATACCCACACTCGTGACTGTGCTTTCAAC11.2345679012345678No Hit
GATCAACGAAACAGACAGAGGGGGTTGATCTGTCAATAGGCATAAAGAAC11.2345679012345678No Hit
CAGCATCACAGTAGCTCTCATCATACTCCCACCTGGAGACAAGCAGCATC11.2345679012345678No Hit
AAAGACCTTTCTTTTTTTTATTCTAGGGAAGAAGACAAAAATATATTTGA11.2345679012345678No Hit
TGCCAGCCCTCTCCGTAGACCCGTCCGGGGCCGTGTGGGTTGTCCCGGTG11.2345679012345678No Hit
GAAAATGAAGAGGAAGGAACTCTTCCTATAAGTGGGAGCTTATATATAAG11.2345679012345678No Hit
TCAGCAGCAGCAAGAAAGGTGGCTTTCTGTGGCCAGAAGGCGCAGCAGCA11.2345679012345678No Hit
CAGCCAACAGGTCTGGAGAAGACCTTACAGTTCTCATGGACAAAGTTTGT11.2345679012345678No Hit
TGGCCGCGGCTCCCCGCGCCGCGCCGGGTGAATGGCCGCGGGCGGAGGAT11.2345679012345678No Hit
TTTAATTTTACTGAGTAGTGGAAAGATGGGAAGCACAATTGGTATTCTGG11.2345679012345678No Hit
CCCCCTCCCAACACACAGGGGGCTCCCCCCGCAGCAGCCACAGCAGCCGC11.2345679012345678No Hit
AGAACGGAGCTCGGGGGAGGCTAGCACGCCTGGGAGACACCTGTCCTGCA11.2345679012345678No Hit
GTAAGAGTTCCTGATTAAGATTCCCAAATATCTAAATGACTGCACAGAAT11.2345679012345678No Hit
TCTTGATCAGGGCTGAAAAGTTCCATGGCAGCCTCATAACTGGAGGGTGT11.2345679012345678No Hit
TACTCGTACTGCAGGGGCGGGTGGGGACAGAGAGACACAGTCAGTCCATG11.2345679012345678No Hit
CAAGTAGAGTGAGTCGTCCTCCATGTCGACTGGAACGAGGATCACAAGGT11.2345679012345678No Hit
ACAGTAAGTGTTTGAAGAGTACATTCTAAATCATTTTTCTCTCTTCCTTT11.2345679012345678No Hit
ACTTGCCCTTTGGTAATCCTGCTCCTTCTGAATCTGTTCCACCTGATCAA11.2345679012345678No Hit
ACATATACACATGCTATCAATTAATGTATTTGAGAATATCTATATGGAAA11.2345679012345678No Hit
TGTGTCTTAAGAGTTCCAGTAACCCAAGCTTGTGTCATTGTCTCTGGGCC11.2345679012345678No Hit
GCCCTGCAGCCCCCAGCCCACCTTGTGGAACAGGGAGGCAAAGACCTCCT11.2345679012345678No Hit
TTCGTGAAGCCACCTCAGGTGGGGGCCCTGATGTTGCTGACGGGGGCGCA11.2345679012345678No Hit
CAATTTCACTCTCCTTCACAGATCTTCAAGTTGTATGTTCATGGAGTAGT11.2345679012345678No Hit
GTTTTCTCCTTGCAAAGTAGGAATCATAATATCTCTGTGGAGGTTTTTAA11.2345679012345678No Hit
AGAGTGAGACTCTTCTTTAAAAAAGAAAAAAAGAAAATGTTTGGGCCTGG11.2345679012345678No Hit
CTTGGTAAACAGATTTTAAATGTCTGATATAAAACATGCCACAGGAGAAT11.2345679012345678No Hit
ATTTATATTAACATTTACATTTTTGGAGATGCTATTAATTGTAGTCTTGG11.2345679012345678No Hit
ATGCTGAGGCTGCTCTGCACGTGGAGTGTGGCCCTGTGGGCAAGGGCTGG11.2345679012345678No Hit
ATGCCGTCACCTACCTTCTTTGTCACCCCGAGCACTGCCCATGAGGAACC11.2345679012345678No Hit
CGGAAGTACTCACGTCGGATTCCCAGAAAACCTGACTAATGGTGCCACTG11.2345679012345678No Hit
TCGAATGTGGTCATTGATTTTTTTTTTCCTAATGTGTTCACAGATTGGTG11.2345679012345678No Hit
TTTCCCATTCACTCTTCTGGATGTAAAAGAGGACGTAGGCCTGTTGACTC11.2345679012345678No Hit
CTTGGGGCCCTTCAGCTTCCCTTCTGGACCTTCAAGGCTCACATCTGGGA11.2345679012345678No Hit
CGAGGAGGGAGGGAATTCCATGTCATGCACAAGGTTGTGAAGAGGGTGGC11.2345679012345678No Hit
CTCAGCGTGAGAGAGGCCAGTGTGAGGCAGGGCCTCACGCTGACCTCCCT11.2345679012345678No Hit
AACAAGGATTTACACTGACATATGGGGTGTTGGTTTGGCTCTATTCTTTT11.2345679012345678No Hit
GCCCTACTGGACACTGGGAGACACGATGACGTACGGAGACAAGATGACGC11.2345679012345678No Hit
GACCAGCAAAACAATTTAATAGAATTGAAATATGGTGAGGATCTTACCAT11.2345679012345678No Hit
TGGAGGGGGCTGTTACCAGGAGCAGGGCGAAAAAGGTCAGGTGGTCACAG11.2345679012345678No Hit
GAGAGGCTGCAGAGGACAGGACAGTGTGTGGCCAAGGCTGCTGTTTGTTC11.2345679012345678No Hit
TGTTGTGTGAATAACAATACCAGTTTGGCAGGAAGATAACACCTTCTGTA11.2345679012345678No Hit
GGCCGACCTTGGGGGGCCCCACCACCAAGAACAACCGCCGGGGGCCACCC11.2345679012345678No Hit
TTGGCCTTCTCCCCAAAACAGGCCCTGTCGACTTCCTTTCTGAGGACGTT11.2345679012345678No Hit
ATAGAATGAAAGGCAGCAGATAAAATTGCATTTCTCAATTGACATGGGAC11.2345679012345678No Hit
GACTGTAGGGGTCATGAGTAGGGGACTGTAGAGTTACACTAGATGTGGTG11.2345679012345678No Hit
CCTACCTCCTCCATGAGGATGATGGAAGTTGCATTGTGCCCCTGCTCTGC11.2345679012345678No Hit
TACCTCAAGCCTAAGTTGTGGAAAAAGCTAAGAAGTGATGAACCTTTGAT11.2345679012345678No Hit
CTGGGAATCCAGGCCAGGCAGATGAGTGGCCCAGGTCGCGATGGTGACCG11.2345679012345678No Hit
AATTGCTTTCTAAATACACAGTTCAGCGCTTACATACATATATGTTAATG11.2345679012345678No Hit
GAGATCCTGAACAGCATGCGGAACAACAGCAGCGACGTGGACACCAAGCT11.2345679012345678No Hit
GGCCGGTCGCAGTGGCTCACGCCCGTAATGCTTCCACTTTGGGAGGCTGA11.2345679012345678No Hit
TCCCCCACAGGTTGGGACAAACATTCCTATGGTTACCATGGTGATGATGG11.2345679012345678No Hit
CCTGGGGGCTGGTATGATGGGGGGTAGACCTGGCCTCAGTGTGGGAGGCT11.2345679012345678No Hit
TCCAGGCCTGCCAGCGGCACCTTATAGGCCAGCGTCAGGGCTCGGGGATC11.2345679012345678No Hit
CAGCAGCACAACACACACAATATCTTCAGCTCCTAGCACCACATCTGCCC11.2345679012345678No Hit
CGGGATTTCACCATGTTGGCCAGGCTGTTCTCAAACTCCTGACCTCAGGT11.2345679012345678No Hit
AAGAAACAGCCACAACAGAGTATGACGGAAAACCTGTCCATGTCCACACA11.2345679012345678No Hit
TGGACTATCATATATCTGTGCAGAACATGATGCGTTGAAAGGAACAAGAG11.2345679012345678No Hit
ACATAGGGAGTGCTCAAGGCCAGTGAGCCACAGTGGTGGTGGTAATGGTG11.2345679012345678No Hit
TGCCTACATGCCCCTGCCCTGCCTTGTTGGGGTGGGATGAGTCACGAACT11.2345679012345678No Hit
TGGTTGTGTTCATCAAGCCCACCTTCCCATTCTGCAGGAGGACCCAAGAG11.2345679012345678No Hit
GCAGCGCCAAGGGGCTGACAAGGGTTGAGGAACTTGCCATAAATCATAGC11.2345679012345678No Hit
GGCTAAGATTAAAAGAGAAACTGATACTTAATATTCAGAATCTGAATATC11.2345679012345678No Hit
CACCATTGACTGTGGGCACAGCTTTTGCAGGCCCTGCCTCTGCCTCTGCT11.2345679012345678No Hit
TTCCCCAGGTGCCATTGGGACAATGAAGAACCCACACTCCAACCTCGTCT11.2345679012345678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)