FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001132182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386013
Sequences flagged as poor quality0
Sequence length300
%GC54

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCCTTTGGCCCCAGACATCAAAAACATCATAGTCCTAGAGACACTA4620.11968508832604083No Hit
ACAGGTCTGCCGCCTTGCAATGCGACGCCTGCCTGGGAGCGCAGGTGAGG4300.1113952120783497No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATAACC4070.10543686352532168No Hit
AATGTCCCTTGGCCCCACATATCAAAAGCATCATGTCCCCGAAACAGTCT3930.1018100426669568No Hit
ATTGTCCCTTGGCCCCAGACATCAAAAACATGGTGATAGCAGTCACCGCT3910.10129192540147612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)