FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001132190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences701483
Sequences flagged as poor quality0
Sequence length167
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTCGGCCACCCCCCG30590043.60761415458393No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAATACCCCCCTCTCTCTCGCAC30346443.260349858799145No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAATACTCCCCTCTCTCTCGCAC92271.3153561811191432No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGCAGTCGGCCACCCCCCG87321.2447913919510523No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTCGGCCACCTCCCG80751.151132671782495No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAATACCCCCCTCTCTCTTGCAC79801.137589934467407No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAATACCCCCCTCTCTCTTGGAA38280.5457010362332373No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAATACCCCCCTCTCTCGCACAG28350.40414379250815774No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAGCCTTCCCTCTCGCACAGTAA21460.3059233081913603No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTCGTCCACCCCCCG8280.11803564733571591No Hit
GTGGTCCCTTGGCCCCAGACGTCCGGCCCGCTACCAATACACAGCCGTGT7730.11019511520592802No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAATACCCCCCTCTCTCTCGCCC7690.10962489468739799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)