FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length208
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGT920.454545454545457No Hit
GGTTTTTGAGGAATTGGATTTTGAGTTTGTTTGTAAGGTGAGATGTTTTG613.636363636363635No Hit
TTTTTATTTTTATAAATAGTAAGGATTGTGTTTTTTTGTATGGTGTTTTG36.8181818181818175No Hit
ATGTAGAAAGAGTTTTAGGTATTTTTTTTTAAATGTTTTTTTAAGTGATA12.272727272727273No Hit
ATGTAAAAGAGTTTGGGAGATTTAGGGGATTAGGGTTGTTAGTATTTTAT12.272727272727273No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGTTGAAGCCGCCTGTTAGGCC12.272727272727273No Hit
ATTGTAGCAAGAGTTTGGGAGGGTGAGTTTGTAGTGAGTTTTGATTTTGT12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGAGAGTTAGGGAAGATTTAGGATGAGAGAGAG12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGTAATTTGTATCGTTAGTAGGTTTTTTTGTGAT12.272727272727273No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGAGATTGAAGTTGTAGTGAGTTATGATTATAT12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGATTAACGATATTTTAAGAGTACGTAGTATAC12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGAGTGGGTATGGGTTAGGGATAGGGGTAGGTG12.272727272727273No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGGGACCGAGGGT12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGAGGTAAAGGTTGTAGTGAGTCGTGGTCGCGT12.272727272727273No Hit
ATTGTAGAAATAGTTTGGGGGGTTAAGGTTGTAGTGAGATTTGATTGAGT12.272727272727273No Hit
CGGTTCCCATTCCCGATGACGGTTTTCGATTCGGACTGCGGGGGCGAGTT12.272727272727273No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAGTAATAATCAGTCAAAATATC12.272727272727273No Hit
ATTGTAGAAATAGTTTGGGAGGTTAAGGTTGTAGTGAGATTTGATTGAGT12.272727272727273No Hit
GTTAAAATTTTGGGTTAAGGAGATCGATGCGTTGTCGTTTGTATTAAGAG12.272727272727273No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGCGGGT12.272727272727273No Hit
GTTAAAATTTTGGGTTAAGGAGATTGACGCGTTGTCGTTTGTATTAAGAG12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGAAGGGAAGATATTGTAAAGTTGTTTTTTTTT12.272727272727273No Hit
GGGGTCCCTTGGCCCCAGACGTCCATACCGTAGTGGTATAGTCCGAAGGC12.272727272727273No Hit
GGTTTTTGAGGAATTGGATTTTGAGTTTGTTTGTGAGGTGAGATGTTTTG12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGAGATTATTAGGATTTTTTTTTTTAGGTGGGT12.272727272727273No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGC12.272727272727273No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAATAGGGAGGGAGGTTATAATA12.272727272727273No Hit
ATTGTAGAAAGAGTTTGGGGAGGAGATGGATTTAGGTATTTATTTTGAGG12.272727272727273No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)