FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16970
Sequences flagged as poor quality0
Sequence length208
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCCAGTCAGGGTGAGTAGTGGTGGGGAGCCGGGCAGGGGCCCAGCCCT480.2828520919269299No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC420.24749558043606362No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA320.18856806128461992No Hit
GGTTTTTGAGGAATTGGATTTTGAGTTTGTTTGTAAGGTGAGATGTTTTG290.1708898055391868No Hit
ACGAAGGCGGCAAAGGCGACGGAATGGAGGAGGTGCCTCACGGTAAGCTC270.15910430170889805No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGGGATAGTGGAG240.14142604596346495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTTGGTGGATTGTGGGTGT230.13553329404832057No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCAGCCACGGTGAGTCAGCC200.11785503830288745No Hit
ACAGGTGGAGAACACTGACAGCATCCTTTTTTCACAGGCGACACACACCA190.11196228638774308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)