FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199
Sequences flagged as poor quality0
Sequence length151
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAC199.547738693467336No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAC147.035175879396985No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACC73.5175879396984926No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACC52.512562814070352No Hit
CTTACCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCAAAAG42.0100502512562812No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGT42.0100502512562812No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGT42.0100502512562812No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGG31.507537688442211No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGT21.0050251256281406No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCAGAC21.0050251256281406No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGC21.0050251256281406No Hit
CTTCNCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT21.0050251256281406Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTTCCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT21.0050251256281406Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAATCGTCAATAG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGGGGTTCCCTGGCCCCAGAAGGGGATGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCACGGCCCCAGGGATCGAAGT10.5025125628140703No Hit
ATTCCCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCCACCA10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCAACC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAATTGTCATAGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGGGGTTCCCTGGCCCCAGTAGTCCATGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCACTACGCCTCAC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCCACCT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATAG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGC10.5025125628140703No Hit
CTTANCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTCNCTGGGGGCTGGCGGATCCAAGATCGGAAGAGCACACGTCTGAACT10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCATATT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGGTAAAGG10.5025125628140703No Hit
CTTCCCTGGGGGCTGACGGATCCAAGGTCGGAAGAGCACACGTCTGAACT10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (96% over 26bp)
CTTACCTGAGGAGACGGTGACCAGGGTGCCATGGCCCCAGACGTCCATGT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCATGGTCCCCTGGCCCCAGGCGTCGATCC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGGCGTCCATAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACCTCCATGC10.5025125628140703No Hit
TTTANCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCAAAAG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATAC10.5025125628140703No Hit
CTACCTGAGGAGACGGTGCCCGTGGTCCCCTGGCCCCAGACGTCCACCTC10.5025125628140703No Hit
CGGAAAGGAGGAGACGGGGACAGGGGGAGAGGGGAAAAAGAAGGAAAGAC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAGAG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTCCCCTGGCCCCTGTCGCCAGACG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCACAGGTGGAGAACACTGACAGCATCCTT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTGGTCAAGTC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCGCGGCCCCAGAGGTCCATGC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATGGTCCCCTGGCCCCAGAGGTCCATAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATTGTTCCCTGGCCCCAGATATCAATGG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTACCAAAACC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCACGGCCCCAGTGATCGACGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTTGCCCCAGATGTCGACGG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACATCCATGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCTAAGGGACTTTCCAGGGTCATGCTGTCA10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATGGTTCCCTGGCCCCACCAGTCGTAGG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGAGGTCGAACT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCAAACC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGCGTTCCCTGGCCCCAGGGGTCGAACC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCGGGCTTCCCTGGCCCCAGCCTGCTAACC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATGGTCCCCTGGCCCCAGAAGTCAATAC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCCAAAG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTTCCTCGCACCAGTGAGCTCAGA10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGGCCATCC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATCC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTTGTCACCCT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGAATTCCCTGGCCCCAATAGTCAACCT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCCATTC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATTGTCGCTAGGCCCCGTATATCAAGAG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGCAGTCGGCGG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAT10.5025125628140703No Hit
CTTCCCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAACCC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCAAAAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCCATCT10.5025125628140703No Hit
CTTANCTGAGGAGATGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAATT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCCCCC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGGTCCCTGGCCCCAGTATCTCAATT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCCTGGCCCCAGTAGTGAAACT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCCTGGCCCCAGACGTCCTTTA10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCATGGCCCCAGAGATCGAAGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTTCCCTGGCCCCAGACGTCCATAC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAACGGGGAT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTTGCCCCAGACGTCCATGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTCCCCTGGCCCCAGGATGCAATAT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTCCCTTAGAG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCCTGGCCCCAGTGCTGGAAGC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATGTCAATAG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATGGTTCCCTGGCCCCAGTCGTCAAAGC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTACCCCTCCT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTTCCTCGGCCCCAGCCGACCTTAC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCGAATT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTCCCCTGGCCCCAGAAGTCAAAGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGCCAAAGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATGGTTCCCTGGCCCCAGAGGTCCATCC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATTC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAATGC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGATTCCCTGGCCCCAGGGGTCAAACT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTGGTCTAAGC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCTGGGTTCCCTAGCCCCAGAAGTCAAGGT10.5025125628140703No Hit
CTTCCCTGGGGGCTGACGGATCCAGATCGGAAGAGCACACGTCTGAACTC10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 27bp)
CTTACCTGAGGAGACGGTGACCATGGTCCCCTGGCCCCAGAAGTCCATAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATTGTCCCCTGGCCCCAGATATCAAACG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGGCATCAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCGTAAT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTCGGCCCCAGACGTCCATAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCGTAT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAGCTT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCTGGATTCCCTGGCCCCAGTGATAAAAGA10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCAAACC10.5025125628140703No Hit
CTTCCCTGGGGGCTGACGGAGCCAAGATCGGAAGAGCACACGTCTGAACT10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTACCTGAGGAGACGGTGACCGTTGTCCCTGGGCCCCACACATCCAAAG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCAAAG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTTAAGAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGGCCCAGTAGTCAAATT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAATGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCATCTCCCCGTCAA10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAGCTT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCACACGCCCACGT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTCGCCGTAGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGACAAATT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGCTCCCTGGCCCCAGTAGTCAAATT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATGC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACCCTGACAT10.5025125628140703No Hit
CTTACCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTTGAGGAGACGGTGACCAGGGTGCCCTGGCCCCAGTGCTGGAAT10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTTGTTACCCG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCAACAG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAATCAAAGG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGCCGAACT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCACGGCCCCAGTAGTCATCGG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTTGTCAAACG10.5025125628140703No Hit
CTTACCTGAGGAGACGATGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTCCCCTGGCCCCAGTCGTCCATAC10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAGTGG10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTCCCCTGGCCCCAGTAGTCTGAAT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCATGGTTCCCTGGCCCCAGACACCCATCC10.5025125628140703No Hit
CTTCCCTTTTTGTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACTC10.5025125628140703Illumina Multiplexing PCR Primer 2.01 (100% over 27bp)
CTTACCTGAGGAGACGGTGACCATGGTCCCTTGGCCCCAGATATCAAAAG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCACTAGTCCAAGT10.5025125628140703No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGGTAAAGG10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCTAAGC10.5025125628140703No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGCCGCCTG10.5025125628140703No Hit

[WARN]Adapter Content

Adapter graph