FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001132305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3580573
Sequences flagged as poor quality0
Sequence length300
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAC93091325.998995132901914No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACC344160.9611869385151482No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGT335690.9375315068286556No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGT329720.9208581978359329No Hit
CTTACCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCAAAAG232650.6497563378822329No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATAC226220.6317983183138565No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGC164420.45920024532386294No Hit
CTTCCCTTCTTCTCCTTTTCCCCTTTTCCCTTTTCCCCCTCCTTCCCTCC155550.4344276740063671No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATGC133660.3732922076997173No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGC121050.33807438083234165No Hit
CTTACCTGAGGAGACGGTGACCATGGTCCCTTGGCCCCAGACGTCCATAC100100.2795641926585493No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATCC93140.26012596307909375No Hit
CTTCCCTTCTTCTCCTTTTCCCTTTTTCCCTTTTCCCCCTCCTTCCCTCC88020.24582657580225287No Hit
CTTACCTGAGGAGACGGTGACCGGGGTCCCTTGGCCCCAGACGTCCATAC84170.23507410685384714No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCCTGGCCCCAGACGTCCATAC80650.22524327810101902No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGG77720.21706023030392063No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAT76930.2148538795326893No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAACC58280.1627672442371654No Hit
CTTCCCTTCTTCTCCTTTTCCCCTTTTTCCTTTTCCCCCTCCTTCCCTCC58070.16218074593088871No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATGT57240.15986268119655708No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATAT53070.14821650054334878No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCAATAC52140.14561915090126634No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAAC50060.13981002482004976No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGA41250.11520502444720439No Hit
CTTACCTGAGGAGACGGTGACCGTTGTCCCTTGGCCCCAGACGTCCATAC36840.10288856001539418No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAAT36640.1023299901998926No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)