FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001132338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences734796
Sequences flagged as poor quality0
Sequence length47-300
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGT62235184.69711321237459No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGC108341.4744228330039901No Hit
CTTACCTGAGGAGACGGTGACCGGGGTCCCTTTGCCCCAGACGTCCATGT87771.1944811893369043No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCAATGT37360.5084404378902444No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCCTTGCCCCAGACGTCCATGT30800.41916395843200016No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACC27330.3719399670112521No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATGT19380.2637466725458495No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATGC13070.17787249794500787No Hit
CTTACCTGAGGAGACGGTGACCGTGGTTCCTTTGCCCCAGACGTCCATGT11800.16058878926940268No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGG11800.16058878926940268No Hit
CTTACCTGAGGAGACGGTGACCGTGGCCCCTTTGCCCCAGACGTCCATGT9970.13568391771321564No Hit
CTTACCTGAGGAGACGGTGACCATGGTCCCTTTGCCCCAGACGTCCATGT8630.11744756367753771No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAC8200.11159559932280524No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCGATGT8180.11132341493421304No Hit
CTTACCTGAGGAGACGGTGACCGCGGTCCCTTTGCCCCAGACGTCCATGT8090.1100985851855481No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATAT7700.10479098960800004No Hit
CTTACCTGAGGAGACGGTGACCGGGGTCCCTTTGCCCCAGACGTCCATGC7500.10206914572207797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)