FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001132339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88002
Sequences flagged as poor quality0
Sequence length64-300
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACC4983856.63280379991363No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCCTGGCCCCAGTGCTGGAAGT1079612.267903002204497No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGT58386.633940137724142No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAACAT34703.9430922024499444No Hit
CTTACCTGAGGAGACGGTGACCAGAGTTCCCTGGCCCCAGGGGTCGAACC21472.4397172791527466No Hit
CTTACCTGAGGAGACGGTGACCCCAGGCTGTCCTGCAGGACCAGGGACAA7940.9022522215404196No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTGCTGGAAGT6190.7033931047021659No Hit
CTTACCTGAGGAGACGGTGACCCCAGGCTGTCCTGCAGGACCAGGAACAA4060.4613531510647485No Hit
CTTACCTGAGGAGACGGTGACCCGGGTTCCCTGGCCCCAGGGGTCGAACC2630.2988568441626327No Hit
CTTACCTGAGGAGACGGTGACCCCGAAACCCAGCAGTGCACGCGAGCTAG2520.28635712824708526No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAAGC2010.22840389991136564No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGAGTCGAACC1880.21363150837480968No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCCTGGCCCCAGTGCTGGAAGC1850.21022249494329673No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAAAC1850.21022249494329673No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTGGTCGAACC1720.19545010340674077No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGCGTCGAACC1690.19204108997522784No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTTGCCCCAGGGGTCGAACC1690.19204108997522784No Hit
CTTACCTGAGGAGACGGTGACCCACGAGGGAGCAGGGTGACACCCATTGG1500.170450671575646No Hit
CTTACCTGAGGAGACGGTGACCGCCGCGGTGGAGGAGCTTTTGGTGGCCG1460.1659053203336288No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGAGGTCGAACC1300.14772391536555987No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACT1250.14204222631303834No Hit
CTTACCTGAGGAGACGGTGACCGCGGCGGGGGGTTATCAGCCACCAGTTT1180.1340878616395082No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCAAACC1110.12613349696597803No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGCCGAACC1090.12386082134496944No Hit
CTTACCTGAGGAGACGGTGACCAGGGTCCCCTGGCCCCAGTGCTGGAAGT1030.11704279448194359No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGC970.11022476761891775No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCACGGCCCCAGAGATCGAAGT960.10908842980841345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)