FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001132360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences884710
Sequences flagged as poor quality0
Sequence length167
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC54730.618620790993659No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATATTT15250.17237286794542844No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA11570.13077731686089228No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATATTG9610.1086231646528241No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATACGA9500.10737981937584067No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATAGAA9050.10229340687909032No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTTATACCA8890.10048490465802352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)