FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1009
Sequences flagged as poor quality0
Sequence length208
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGTACTAC40.39643211100099107No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCACCCCATGATGGTACTACTACA30.29732408325074333No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTTGGTGGATTGTGGGTGT30.29732408325074333No Hit
ATTGCGTACCCGACGACCAAAATTAGGGTCAACGCTACCTGTAGGAAGTG20.19821605550049554No Hit
ACATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACCG20.19821605550049554No Hit
TGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGA20.19821605550049554No Hit
ATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCT20.19821605550049554No Hit
ATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAG20.19821605550049554No Hit
TGACGACCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACT20.19821605550049554No Hit
TCATCCATTAACTTCTCAGTAACAGATACAAACTCATCACGAACGTCAGA20.19821605550049554No Hit
CGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATAC20.19821605550049554No Hit
AATATAACCAGTAGTGTTAACAGTCGGGAGAGGAGTGGCATTAACACCAT20.19821605550049554No Hit
GCCTACAGTATTGTTATCGGTAGCAAGCACATCACCTTGAATGCCACCGG20.19821605550049554No Hit
GTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGT20.19821605550049554No Hit
TTAGTACCTCGCAACGGCTGCGGACGACCAGGGCGAGCGCCAGAACGTTT20.19821605550049554No Hit
GGTTGTCAGCGTCATAAGAGGTTTTACCTCCAAATGAAGAAATAACATCA20.19821605550049554No Hit
AACATAAACATTATTGCCCGGCGTACGGGGAAGGACGTCAATAGTCACAC20.19821605550049554No Hit
TGAACACGACCAGAAAACTGGCCTAACGACGTTTGGTCAGTTCCATCAAC20.19821605550049554No Hit
TTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAA20.19821605550049554No Hit
TTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCATATAACTGGTA20.19821605550049554No Hit
TAACTTTACCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTA20.19821605550049554No Hit
GGCTTTAACCGGACGCTCGACGCCATTAATAATGTTTTCCGTAAATTCAG20.19821605550049554No Hit
GGTTTTTGAGGAATTGGATTTTGAGTTTGTTTGTAAGGTGAGATGTTTTG20.19821605550049554No Hit
ACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGC20.19821605550049554No Hit
CGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTG20.19821605550049554No Hit
CAGCAAGGTCCATATCTGACTTTTTGTTAACGTATTTAGCCACATAGAAA20.19821605550049554No Hit
GTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGTT20.19821605550049554No Hit
TACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGG20.19821605550049554No Hit
GAGCGCCAGAACGTTTTTTACCTTTAGACATTACATCACTCCTTCTGCAC20.19821605550049554No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA20.19821605550049554No Hit
AGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATG20.19821605550049554No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGT20.19821605550049554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)