FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001132556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences264384
Sequences flagged as poor quality0
Sequence length300
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGGACGAGCTGCTATT12485047.222978697651904No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGGTAAAGCA10011037.865377632534496No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGGCCCAACCACTCCAAAA60092.272830428467683No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGGTAAAGCAGCT11070.4187091503267974No Hit
GTGGTCCCTTTGCCCCAGACGTCCATACCGTAGTAGTAGTAGGTAAAGCA10960.4145485354635681No Hit
GTGGTCCCTTGGCCCCAGACGTCCATGTAGTAGTAGGACGAGCTGCTATT9980.37748123940934397No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC6100.23072500605180343No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTCGTAGTAGGACGAGCTGCTATT6050.22883381747760834No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGCAGTAGTAGGACGAGCTGCTATT3790.14335209392398934No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTACGAGCTGCTATT3290.12444020818203824No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGGTACAGCA2960.11195836359235052No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGGTAACGCA2760.10439360929557007No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGGACGCGCTGCTATT2670.10098946986201887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)