FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12887
Sequences flagged as poor quality0
Sequence length167
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGGGATAGTGGAG2131.6528284317529292No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGTAGCAGCTGGTACTACTACA1100.8535733685109025No Hit
TCCCCAGTCAGGGTGAGTAGTGGTGGGGAGCCGGGCAGGGGCCCAGCCCT240.1862341894932878No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAATAACCACTACTATC230.17847443159773416No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATTAGG130.10087685264219756No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC130.10087685264219756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)