FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001132586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567295
Sequences flagged as poor quality0
Sequence length167
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGGGATAGTGGAG8860.15617976537780168No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGTAGCAGCTGGTACTACTACA7510.13238262279766258No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATAACC6810.12004336368203491No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC5930.1045311522223887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)