FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001132588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434960
Sequences flagged as poor quality0
Sequence length167
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCCAGTCAGGGTGAGTAGTGGTGGGGAGCCGGGCAGGGGCCCAGCCCT92992.137897737723009No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC27050.6218962663233402No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA5960.1370240941695788No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTACCAGCTGCT4710.10828581938569064No Hit
ACAGACAGGCCACCCAGGGCTCAGGCTGGGTATGGTGGGCTCTGGTGGGA4410.10138863343755748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)