FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001132589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences732475
Sequences flagged as poor quality0
Sequence length167
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATACACCATTA31083242.43585105293696No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTCCGGACGAGC9608613.117990375098126No Hit
GTGGTCCCTTGGCCCCAGACGTCGCCTCTCGCACAGTAATACACAGCCGT7828010.687054165671183No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCGGGGTACAGTA384415.248097204682754No Hit
AGGGTTCCCTGGCCCCAGTAGTCTCCTCTAACTTTATCCCCAGCCCCAAT325234.440151541008226No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATTCCCCGCCG312514.26649373698761No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGTCTTAAGAACCTCAGATCTC78201.0676132291204479No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATACACTATTA77831.0625618621795965No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCCGACCGCTTCT73321.0009897948735451No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATGGGGAGGCT65190.8899962456056522No Hit
GTGGTCCCTTGGCCCCAGACGTCGAGACTCGCACAGTAATACACGGCCGT47340.6463019215672889No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATCCCCTGGCC34250.4675927506058227No Hit
GTGGTCCCTTGGCCCCAGACGTTCGCCCCCCTCGCACAGTAATACACAGC29110.39741970715724084No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGCAGTAGTCCGGACGAGC27750.3788525205638418No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTCCGGATGAGC26160.3571452950612649No Hit
GTGGTCCCTTGGCCCCAGACGTCGCCTCTCGCATAGTAATACACAGCCGT23010.31414041434861256No Hit
GTGGTCCCTTGGCCCCAGACGTCGCCTCTCGCACAGTAATACACAACCGT20840.28451482985767435No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATACACCACCC18520.25284139390422883No Hit
GTGGTCCCTTGGCCCCAGACCCCCCTCCACGACGCACAGTAATACACAGC13700.18703710024232909No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTTTTCCGGGACTCGC10530.14375917266800917No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCGGGGTATAGTA10520.14362264923717533No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATACCCCTCCC9870.13474862623297723No Hit
AGGGTTCCCTGGCCCCAGTAGTCTCCTCTAACTCTATCCCCAGCCCCAAT9260.12642069695211441No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATACACCACAT9110.12437284548960714No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATTACACCCCC8670.1183658145329192No Hit
AGGGTTCCCTGGCCCCAGTAGTCTCCTCTAACTTTATCCCCAGCCTCAAT8550.1167275333629134No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGGCGGTAGCATTCCCTGCCG8520.11631796307041196No Hit
GTGGTCCCTTGGCCCCAGACGTCCACCCAGGTCGGTAGCATACACCATTA7770.1060787057578757No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAATATCCTCCCCCTCTCGCACAGTAA7450.10170995597119355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)