FastQCFastQC Report
Fri 2 Sep 2022
EGAF00001132591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences772885
Sequences flagged as poor quality0
Sequence length167
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTTCCCTGGCCCCAGGGGTCGAACCACCTCACTTCCCGATCCCACTT48374462.589389107046976No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAATATAG14335718.548296318339727No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCACCTCACTTCCCGATCCTACTT125101.6186107894447428No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGCAGTAGTAGTAATATAG42410.5487232900108037No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAACATAG35780.4629407997308784No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCACCTCTCTTCCCGATCCCACTT32190.4164914573319446No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCACCTCACTTCCCGATCCCACCC19300.2497137349023464No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAATATAGAAG11580.14982824094140784No Hit
GTGGTCCCTTGGCCCCAGACGTACAGCCACTGCTATATTAGGGGGTACAC7900.10221443034862884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)