FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001132592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2030146
Sequences flagged as poor quality0
Sequence length208
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGTACTAC114590.5644421632729862No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGT47570.23431812293303045No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCACCCCATGATGGTACTACTACA31010.15274763489916487No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC24530.1208287482772175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)