FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43
Sequences flagged as poor quality0
Sequence length208
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGTACTAC24.651162790697675No Hit
ATTGTAGAAAGAGTTTGGGAGAGGGATAGGGTATGTGTATATCGTTTTGA24.651162790697675No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTTTCGGGGATGGTAGCA24.651162790697675No Hit
GGTTTTTGAGGAATTGGATTTCGAGTTTGTTCGTAAGGCGAGACGTTTCG12.3255813953488373No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGCGACCATA12.3255813953488373No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGACCAG12.3255813953488373No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTTCCCTAGCTCCAGATC12.3255813953488373No Hit
AGGGTTCCCTGGCCCCAGTTATCCAGCCACTGTTTACGATCTCTCGCACA12.3255813953488373No Hit
GTTAAAATTTTGGGTTAAGGAGATCGACGTGTTGTCGTTTGTATTAAGAG12.3255813953488373No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTCGAGCAC12.3255813953488373No Hit
ATTGTCCCTTGGCCCCAGATATCAAAAGCACCAATCGGGGAGCTGGAGAC12.3255813953488373No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTTGGTGGATTGTGGGTGT12.3255813953488373No Hit
GTGGTCCCGTGGCCCCAGACGTCCAAACCGAAGTTGTCCTCAGCTCTCAG12.3255813953488373No Hit
TTTTTATTTTTATAAATAGTAAGGATTGTGTTTTTTTGTATGGTGTTTTG12.3255813953488373No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGACGTACCATCGTATGGAAATACT12.3255813953488373No Hit
GTTAAAATTTTGGGTTAAGGAGATCGACGCGTTGTCGTTTGTATTAAGAG12.3255813953488373No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTCCCAACCCTCGTC12.3255813953488373No Hit
AGTGATGGCTCCCGCAGGAGCAGCGGGGACCCCCGTGATGGGGACAGTGT12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGTGTAGGGAAATTGTTTTTTTTTAATATAGTTGT12.3255813953488373No Hit
TCAATCCTGACGGTTATTTCCTAGACAAATTAGAGCCAATACCATCAGCT12.3255813953488373No Hit
AGGGTTCCCTGGCCCCTAACCTACGGGGCAATAACCACTCCAAAAATCGT12.3255813953488373No Hit
GTGGTCCCTTGGCCCCAGACGTCCATGCAGTAGTAGCCGTAGTGGTAACC12.3255813953488373No Hit
TTTTTATTTTTATAAATAGTAAGGATTGTGTTTTTTCGTACGGCGTTTTG12.3255813953488373No Hit
AGGGATCCCTGGCCCCAGTTTTGGGAGACATACCAGCCACTGCCACCTCC12.3255813953488373No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAAGTGGTAGGGGCAGGTGG12.3255813953488373No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGTAGTCAAGTAG12.3255813953488373No Hit
GTTAAAATTTTGGGTTATTTTTTGAATTTATTTAGATCGGAAGAGCGGTT12.3255813953488373No Hit
GTTAAAATTTTGGGTTATTTTTTGAATTTTTATTTTGATCGGAAGAGCGG12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGGGAGGTTAAGGTTTTAGTGAGTTTTGATTGTAT12.3255813953488373No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGTGGCGCGCACA12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGGGAGAGAAGTTAGTATATTTAAAGTGTTTATAG12.3255813953488373No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGTTCACACCCTCGTATTTAAG12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGGGAGGTTTAGGTTGTAGTGAGTGGTGTTTATAT12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGGGAGGTGATTTGGGTTTGAGAAGTATTGTAGTT12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGGGAGGTAAAGGTTGCGGTGAGTCGAGATTGCGT12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGGGAGATTGAGGTTAGTTTGGGTAATATGGTGAT12.3255813953488373No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTTAGGTGGGTAGATTATTTGAGG12.3255813953488373No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGAAGTAGGAACTTTCGTCCCG12.3255813953488373No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTATAGAGGTAA12.3255813953488373No Hit
ATTGTAGAAAGAGTTTGGGAGATTATTATTTTTTGTGTATTATTATTTAT12.3255813953488373No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)