FastQCFastQC Report
Tue 7 May 2024
EGAF00001132594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182
Total Bases37.8 kbp
Sequences flagged as poor quality0
Sequence length208
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTTTGAGGAATTGGATTTCGAGTTTGTTCGTAAGGCGAGACGTTTCG2212.087912087912088No Hit
GTTAAAATTTTGGGTTAAGGAGATCGACGCGTTGTCGTTTGTATTAAGAG189.89010989010989No Hit
TTTTTATTTTTATAAATAGTAAGGATTGCGTTTTTTCGTACGGCGTTTCG158.241758241758241No Hit
GTTTGTAATTTTAGTTTTTCGGGAGGTTGAGGTCGGCGGATCGTGGGTGT126.593406593406594No Hit
ATTGTAGAAAGAGTTTGGGAGGTTAAGGTTGTAGTGAGATTTGATTGAGT105.4945054945054945No Hit
TTTTTATTTTTATAAATAGTAAGGATTGCGTTTTTTCGTACGGCGTTTTG73.8461538461538463No Hit
ATTGTAGAAAGAGTTTGGGAGATCGAGGGGCGTAGAGTGGGGTCGGATTA63.296703296703297No Hit
GTTAAAATTTTGGGTTATTTTTTGAATTTTTATTTTGATCGGAAGAGCGG63.296703296703297No Hit
GGTTTTTGAGGAATTGGATTTTGAGTTTGTTTGTAAGGTGAGATGTTTTG52.7472527472527473No Hit
GTTAAAATTTTGGGTTAAGGAGATCGATGCGTTGTCGTTTGTATTAAGAG31.6483516483516485No Hit
GGTTTTTGAGGAATTGGATTTCGAGTTTGTTCGTAAGGTGAGACGTTTCG21.098901098901099No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTCGGCGGATCGTGGGTGT21.098901098901099No Hit
ATTGTAGAAAGAGTTTGGGAATAGTTAAGGGATAAAAGTTGTGATGATGG21.098901098901099No Hit
ATTGTAGAAAGAGTTTGGATAGGGAGGAGTAGAGGGAGTTGATTTTTTTA21.098901098901099No Hit
GTTAAAATTTTGGTTAAGGAGATCGACGCGTTGTCGTTTGTATTAAGAGA21.098901098901099No Hit
GGTTTTTGAGGAATTGGATTTCGAGTTTGTTCGTAAGGCGGGACGTTTCG10.5494505494505495No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAAGGGGTACGTAGGTAACCACTCCA10.5494505494505495No Hit
GTTTGTAATTTTAGTCTTTTGGGAGGTTGAGGTAGGTGGATTATTTGAGG10.5494505494505495No Hit
GGTTTTTGAGGAAGTGGATTTCGAGTTTGTTCGTAAGGCGAGACGTTTCG10.5494505494505495No Hit
GTTAAAATTTTGGGTTATTTTTTGAATTTTTATTTTGATCGGAGAGCGGT10.5494505494505495No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAGCCAGTTTATGTGGGATAACC10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTTGGTGGATTGTGGGTGT10.5494505494505495No Hit
TTTTTATTTTTATAAATAGTAAGGATTGCGTTTTTTCGTACGGTGCCCCG10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGTTTGAGGTCGGCGGATCGTGGGTGT10.5494505494505495No Hit
GTTAAAATTTTGGGTTAAGGAGATCGGTGCGTTGTCGTTTGTATTAAGAG10.5494505494505495No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTACCCCGTGCGCTCCCAGCC10.5494505494505495No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTCCTTAGT10.5494505494505495No Hit
TTTTTATGTTTTAAATAGTAAGGATTGCGTTTTTTCGTACGGCGTTTTGT10.5494505494505495No Hit
AGGGTTCCCTGGCCCCAGTACTGGTAACCACTACTATCATAGTAATACCG10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGTTTAAGATGGTTTTTAGAAGATCGGAAGA10.5494505494505495No Hit
GTTAAAATTTTGGGTTAAGGAATGCCGAGACCGATCTCGGGTTATTTTTT10.5494505494505495Illumina Paired End PCR Primer 2 (95% over 22bp)
GTTTGTAATTTTAGTTTTTCGGGAGGTTGAGGTCGGCGGATTGTGGGTGT10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGGTTTTTGGGTGATGGTGATAATATAAGTTAT10.5494505494505495No Hit
GTTAAAATTTTGGGTAAGGAGATCGACGCGTTGTCGTTTGCATTAAGAGA10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGTGTTTTATGTAGTTTAGAGTTGTTTATTT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTAAGGTGGGTAAATTATTTGAGG10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGATTGAGTGTATATTTTTTTTTATTTTTAATGA10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGGTGATTTGGGTTTGAGAAGTATTGTAGTT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGAGGAGGGCGGTTTGAGTT10.5494505494505495No Hit
GTTAAAATTTTGGGTTAAGGAGATTGACGCGTTGTTGTTTGTATTAAGAG10.5494505494505495No Hit
ATTGTAGAAAGAGCTTGGGAGATGGAAGAAGGAGTTATAAGGGGTATTAG10.5494505494505495No Hit
ATTGTCCCTTGGCCCCAGATATCAAAAGCATGATCATAACCACTCCAAAA10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGAGGAGGGTGGTTTGAGTT10.5494505494505495No Hit
GGTTTTTGAGAATTGGATTTCGAGTTTGTTCGTAAGGCGAGACGTTTCGT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTCGGGAGGTTGAGGTCGGCGGATCGTGGGCGT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGCGGGAGGGTGGTTTGGAT10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGCGGTTAAGGTTGTAGTGAGATTTGCTTGAGT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGAGAGGTTGAGTTAGGAAGATTATTTGAGT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAAGTTGAGGTAGGAGAATCGTTTGAAT10.5494505494505495No Hit
GGTTTTTGAGGAATAAGGTATGATTGTAGAAAGAGTTTGGGAGATCGGAA10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTCGGGAGGTTGAGGTCGGCGGATTGTGGGTG10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGATATAGTGATATTTTTTTTTTTTTTTTTT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTCGGGAGGTTGAGGACGGCGGATCGTGGGCGT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTGGGTGGATTATTTGAAG10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTCGGTGGATTGTGGGTGT10.5494505494505495No Hit
GGTTTTTGAGGATTGGATTTTGAGTTTGTTTGTAAGGTGAGGTGTTTTGT10.5494505494505495No Hit
GTTTGTATTTTAGTTTTTTGGGAGGTTGAGGAGGAGGGTGGTTTGAGTTT10.5494505494505495No Hit
GTTAAAATTTTGGGTTAAGGAGCTCGACGTGTTGTCGTTTGTATTAAGAG10.5494505494505495No Hit
GTTAAACTTTTGGGTTAAGGAGATCGACGCGTTGTCGTTTGTATTAAGAG10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGATTGAGGGGTGTAGAGTGGGGTTGGATTA10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTTGGCGGATCGTGGGTGT10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGGCGTAAGTATATTTTTCGTTTTTTGCGTTTT10.5494505494505495No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGCCACGCCCTCTGTACCA10.5494505494505495No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGGTTGCAAA10.5494505494505495No Hit
TTTTTATTTTTGTAAATAGTAAGGATTGCGGTTTTTCGTACGGCGTTTCG10.5494505494505495No Hit
GGTTTTTGAGGAATTGGATTTTGAGTTTGTTTGTAAGGCGAGACGTTTCG10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTCGGGAGGTTGAGGTTGGCGGATCGTGGGTGT10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGATAGAGGTTATAGGGAGTTGAGATTGTGA10.5494505494505495No Hit
TTTTGTAATTTTAGTTTTTTGGGAGGTCGAGGTAGGTGGATTATTTGAGG10.5494505494505495No Hit
GTTAAAATTTTGGGTTAAGGAGATTGATGTGTTGTTGTTTGTATTAAGAG10.5494505494505495No Hit
GTTAAAATTTTGGGTTGAAGTAATTTTTTTGTTTTAGTTTTTTGAGTAGT10.5494505494505495No Hit
TTTTTATTTTTATAAATAGTAAGGATTGCGTTTTTTCGTATGGCGTTTCG10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGATTATTAGGATTTTTTTTTTAAGATGGTT10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTCGGGAGGTTGAGGTCGGCGGATCGTGGGTGC10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTGAGGTTGGTGGATTGTGGGTGC10.5494505494505495No Hit
GGTTTTTGCGGAATTGGATTTTGAGTTTGTTCGTAAGGCGAGACGTTTCG10.5494505494505495No Hit
ATTGTAGAAAGAGTTTAAGATGGTTTTTAGAAGATCGGAAGAGCGGTTCA10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGAGGTTGATAAAGTTTAGGTTTAGAGATTA10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGTTAAGGTGGATGGATTATTTGAGG10.5494505494505495No Hit
TTTTTATGTTTATAAATAGTAAGGATTGCGTTTTTTCGTACGGCGTTTCG10.5494505494505495No Hit
ATTGTAGAAAGAGTTTGGGAGATTGAGGGGCGTAGAGTGGGGTCGGATTA10.5494505494505495No Hit
GGTTTTTGAGGAATTGGATTTTGAGTTTGTTCGTAAGGCGAGACGTTTCG10.5494505494505495No Hit
GTTTGTAATTTTAGTTTTTTGGGAGGGGGGGAGGGTGGATTATAAGGTTA10.5494505494505495No Hit

[FAIL]Adapter Content

Adapter graph