FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37
Sequences flagged as poor quality0
Sequence length208
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTTCCCTGGCCCCAGTAGTCAAACGGGGAAGAGCAGCTGGTACTACT38.108108108108109No Hit
ATTGTCCCTTGGCCCCAGATATCAAAAGCATCCCCTGGACCACTACTATC25.405405405405405No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAGTAAGAGCCTTCATAGTAATA12.7027027027027026No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC12.7027027027027026No Hit
AGGGATCCCTGGCCCCAGGAGTCAAAGTACGCCACGATCATAGTACCCCT12.7027027027027026No Hit
CCATCATAGCCCTGCTGACCCTGTGACCTTGTGGCAGCCCCTCTGGCCCC12.7027027027027026No Hit
GTGGTCCCTTTGCCCCAGACGTCCATACCGTAGTAGTAGTAAAGGCAGCT12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTTGGAGGTATAATAACCACTCCA12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAAGGGTCGGCCAGCCACTGTGCTCC12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGTTGCCCCCCCCATAGTTCCA12.7027027027027026No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGTAGTATGGGCG12.7027027027027026No Hit
ATTGTCCCTTGGCCCCAGATATCAAAAGCATCGCTCAGGAGGGTCGTTCC12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAGTAGTACGCTGCTGCTATCAT12.7027027027027026No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG12.7027027027027026No Hit
ATTGTCCCTTGGCCCCAAATATCAAAAGCCCCTTGACCACTACTATCATA12.7027027027027026No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGGGATAGTGGAG12.7027027027027026No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAATCCCGGTTTCG12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCTTGGCAGCTACCACCACTACAATATTG12.7027027027027026No Hit
AGGGTGCCACGGCCCCAGAGATCGAAGTACCCAAACAACAAATCGGAGTC12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGCCGGAGTACCAGCTGCTGCTATACCCGGT12.7027027027027026No Hit
CCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTC12.7027027027027026No Hit
ATTGTCCCTTGGCCCCAGATATCAAAAGCATCCATCCGAACCAGCGGGTC12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAGGTCGAATTGTAGCCACCCCACTTT12.7027027027027026No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGCAGTAGTTATGGTAACAGGC12.7027027027027026No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGTAACCCCC12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCCAAAACCACTACTATCATAGTAATGCA12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTCTCCTCCCACAGCACAGTAATA12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAGTACGGATAACCACTCCAAAA12.7027027027027026No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAGAACCCTGT12.7027027027027026No Hit
ACAGGAGACTGTGACAGTGGCGGTGACCACAGACAAGCCACCCAGGGCTC12.7027027027027026No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTAACCTGTACC12.7027027027027026No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGTTAGGACCATAGCTGTATCC12.7027027027027026No Hit
ATTGTCCCTTGGCCCCAGATATCAAATCTATGGCGATAACTCCCCCAAAC12.7027027027027026No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGCCGTAGGCAGC12.7027027027027026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)