FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001132613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences694287
Sequences flagged as poor quality0
Sequence length208
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC152912.202403328882724No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA42140.6069536085221241No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG26670.384135091107856No Hit
TCCCCAGTCAGGGTGAGTAGTGGTGGGGAGCCGGGCAGGGGCCCAGCCCT22610.3256578331439304No Hit
CCATCATAGCCCTGCTGACCCTGTGACCTTGTGGCAGCCCCTCTGGCCCC21540.31024633904998944No Hit
CTTCTGCGGGGCTCTGGACAAGCAGCAGCAGGCAGGGGAGGAGGCGGAGC8900.1281890630243689No Hit
TGGGGACAGGGACAGGTGGTCCTGGGATCAGGCTTCAGCTGCACGTCCTG7210.10384754431524716No Hit
GTGGTCCCTTTGCCCCAGACGTCCATGTAGTAGTAGTAGGGATAGTGGAG7000.10082285855849238No Hit
ACAGACAGGCCACCCAGGGCTCAGGCTGGGTATGGTGGGCTCTGGTGGGA7000.10082285855849238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)