FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001132614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565426
Sequences flagged as poor quality0
Sequence length208
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC293895.197673966177714No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG83101.4696883411799244No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA79741.4102641194426857No Hit
CCATCATAGCCCTGCTGACCCTGTGACCTTGTGGCAGCCCCTCTGGCCCC77361.3681719623788082No Hit
TGGGGACAGGGACAGGTGGTCCTGGGATCAGGCTTCAGCTGCACGTCCTG26930.4762780629118576No Hit
CAGGAAGGGGCTCTGGTGCCGGGCTGAGCGGGGGAAGCAGGGGTAGCGGA17080.30207312716429735No Hit
TCCCCAGTCAGGGTGAGTAGTGGTGGGGAGCCGGGCAGGGGCCCAGCCCT16800.2971211086861941No Hit
ACAGACAGGCCACCCAGGGCTCAGGCTGGGTATGGTGGGCTCTGGTGGGA15220.2691775758454687No Hit
CTTCTGCGGGGCTCTGGACAAGCAGCAGCAGGCAGGGGAGGAGGCGGAGC14770.2612189747199457No Hit
ATGCAGACACCACACGCTCTCCTGCAGTAACTCCTTTCATCTTCACGGTG14720.26033468570599866No Hit
CCAACATGCGGCCTTTACCCTGGGGAGGTGGGGCGGGAACATTCCCTGGA13620.2408803273991645No Hit
CGGCAGCAGCACATGGCACCCGCGCAGAGGCAGTGCAGGCAGCCCGGGCC12420.21965739106443635No Hit
TCCTGGGCCTAGGCCGCCTCCTTCATCCCTGCTGTGCCCAGCCTCTCCCA11590.20497819343291607No Hit
CTGTGGGCTAAGGTCTCCCTTTGGCCAGGCAGGGGTGCTGGAAGGCGGTC10690.18906099118186995No Hit
TTGTGGCAGCCCCTCTGGCCCCTTGGCCCCGTCCTGTTACCTCTCCTCGT9770.17279007332524504No Hit
CACAGTGTGACACTTCGCAGGGACCAGGCGGCCTGGAGTGGACCCTTCCT8970.15864144910209294No Hit
TCTGTGGCTGCTGCACGGCACAGCCGAGGAGAGCTGGGTCCAGGCCTGGC8440.1492679855542547No Hit
CAGGCCAGCCCACCACGTTTGGGACTCTGCACATCCGGACTGGTGTTATC7270.12857562262789474No Hit
AGCACCAGCCCTGGGGGAGAAGAGGCTCAGAACCTGCTAGCCCAGTCATC6630.11725672324937304No Hit
GCCGCGGTGGAGGAGCTTTTGGTGGCCGCTCAGCGCCAGGATCGCCTCAC6520.11531128741868962No Hit
ACGTCTCTGTGGATGGGAGGTGGTGACCCGGCTGCAGGAAGGCTCCTTGG6030.10664525508200896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)