FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001132615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534087
Sequences flagged as poor quality0
Sequence length208
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC181123.3912077994783623No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG33420.6257407501025114No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA31190.5839872530130858No Hit
ACAGACAGGCCACCCAGGGCTCAGGCTGGGTATGGTGGGCTCTGGTGGGA29270.5480380537253294No Hit
CCATCATAGCCCTGCTGACCCTGTGACCTTGTGGCAGCCCCTCTGGCCCC22380.41903285419791153No Hit
CGGCAGCAGCACATGGCACCCGCGCAGAGGCAGTGCAGGCAGCCCGGGCC7010.1312520244829026No Hit
TGGGGACAGGGACAGGTGGTCCTGGGATCAGGCTTCAGCTGCACGTCCTG6010.11252848318719609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)