FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001132617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences741887
Sequences flagged as poor quality0
Sequence length208
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC136801.8439465848572627No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA46070.6209840582191088No Hit
TCCCCAGTCAGGGTGAGTAGTGGTGGGGAGCCGGGCAGGGGCCCAGCCCT43580.5874209953806981No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG25890.34897497866925825No Hit
CCATCATAGCCCTGCTGACCCTGTGACCTTGTGGCAGCCCCTCTGGCCCC19620.2644607601966337No Hit
ACAGACAGGCCACCCAGGGCTCAGGCTGGGTATGGTGGGCTCTGGTGGGA9310.12549080924723038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)