FastQCFastQC Report
Wed 8 May 2024
EGAF00001132619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences701264
Total Bases145.8 Mbp
Sequences flagged as poor quality0
Sequence length208
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGTACTAC40775158.145149330352055No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGACCAG9887214.0991124597869No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC279283.98252298706336No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG106511.5188288576056947No Hit
CCATCATAGCCCTGCTGACCCTGTGACCTTGTGGCAGCCCCTCTGGCCCC57180.8153847908918753No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGAACTAC35690.5089381459764083No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGACCCG33180.4731456341691574No Hit
ACAGACAGGCCACCCAGGGCTCAGGCTGGGTATGGTGGGCTCTGGTGGGA31870.4544650801980424No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGCACTAC31710.45218348581989093No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA30700.43778092130780993No Hit
AGGGTTCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGACCAG22020.3140044262930936No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGGACTAC18210.25967396016336214No Hit
TGGGGACAGGGACAGGTGGTCCTGGGATCAGGCTTCAGCTGCACGTCCTG16500.2352894202468685No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGAACAG14360.20477309543909283No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGCGATAGCAGCTGGTACTAC12800.18252755025211617No Hit
CGGCAGCAGCACATGGCACCCGCGCAGAGGCAGTGCAGGCAGCCCGGGCC11520.16427479522690458No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGACCAA9930.1416014510940245No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGACCAC9850.14046065390494877No Hit
TTGTGGCAGCCCCTCTGGCCCCTTGGCCCCGTCCTGTTACCTCTCCTCGT9170.1307638777978051No Hit
AGGGTGCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCTGGTACTAC8790.1253450911496954No Hit
CACAGTGTGACACTTCGCAGGGACCAGGCGGCCTGGAGTGGACCCTTCCT8410.1199263045015857No Hit
AGGGTGCCCTGGCCCCAGTGCTGGAAGTATTCATTTTTCGGCGGGGCCAG8200.11693171188026193No Hit
CCTGTCCTTCTCACGGGGGGTCTCCAGCACACCCTGCTGCCACTGGCCCC8050.11479271715074495No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCCGGAGATAGCAGCTGGTACTAC7560.10780533436765612No Hit
AGGGTTCCCTGGCCCCAGGGGTCGAACCAGGAGATAGCAGCCGGTACTAC7180.10238654771954642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)