FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001132620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences592580
Sequences flagged as poor quality0
Sequence length208
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGT39710267.0123865132134No Hit
AGGGTTCCCTGGCCCCAGTAGTCAAAGTAGTAATAACCAGTCAAAATATC341775.76749130919032No Hit
ACAGGAGACTGTGACAGTGACGGTGACCACAGACAGGCCACCCAGGGCTC189073.190624050761079No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGC64571.0896419048904789No Hit
ACAGACAGGCCACCCAGGGCTCGGGCTGGGTATGGTGGGCTCTGGTGGGA61441.03682203246819No Hit
CACACCAAGCTCAGAGAGGGCAGGGGTGGGAAGGAGACATCAGATGTGGG45170.7622599480238955No Hit
CCATCATAGCCCTGCTGACCCTGTGACCTTGTGGCAGCCCCTCTGGCCCC40290.6799081980492085No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTACCGTTCTCTCGCACA30820.520098552094232No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGA30570.5158797124438894No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGG17150.28941240001350027No Hit
TGGGGACAGGGACAGGTGGTCCTGGGATCAGGCTTCAGCTGCACGTCCTG15380.25954301528907486No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGCGGGT14320.2416551351716224No Hit
CAGGAAGGGGCTCTGGTGCCGGGCTGAGCGGGGGAAGCAGGGGTAGCGGA9830.16588477505146984No Hit
TTGTGGCAGCCCCTCTGGCCCCTTGGCCCCGTCCTGTTACCTCTCCTCGT8480.14310304093961998No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGCAGTAGTAGTGCCCGAGGGT8350.14090924432144183No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGCGCCCGAGGGT8180.13804043335920888No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCTCGAGGGT7250.12234634985993453No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCAGAGGGT7170.12099632117182489No Hit
CAGGCCAGCCCACCACGTTTGGGACTCTGCACATCCGGACTGGTGTTATC6290.10614600560261905No Hit
TCTGTGGCTGCTGCACGGCACAGCCGAGGAGAGCTGGGTCCAGGCCTGGC6260.10563974484457796No Hit
GCGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGT6090.10277093388234498No Hit
GTGGTCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCTGAGGGT6070.10243342671031759No Hit
GTGGCCCCTTGGCCCCAGACGTCCATACCGTAGTAGTAGTGCCCGAGGGT6020.10158965878024907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)