FastQCFastQC Report
Sat 3 Sep 2022
EGAF00001132662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences912389
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGAGAAGCGAACTGATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC57039162.51620745098856No Hit
AGCGANAAGCGAACTGATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC18441320.212102513292027No Hit
AGCGATAAGCGAACTGATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC578716.342798959654271No Hit
AGCTATAAGCGAACTGATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC157781.7293062498561467No Hit
AGCTAGAAGCGAACTGATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC130871.4343662626357838No Hit
AGCTANAAGCGAACTGATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC66580.7297326030892526No Hit
AGCGAGAAGCGAACTGATTGGCTAGTTCAAATAAGGCACAGGGTCATTTC43430.4760031083233139No Hit
AGCGAGAAGCGAACTGATTGGGTAGTTCAAATAAGGCACAGGGTCATTTC22860.2505510259330176No Hit
AGCAAGAAGCGAACTGATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC19980.21898554235090517No Hit
AGCGAGAAGCGAACTGATTGGTTAGTTCACATAAGGCACAGGGTCATTTC17730.1943250083023798No Hit
AGCGAGAAGCGAACTAATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC10650.11672652782968669No Hit
AGCGAGAAGCGAACTTATTGGTTAGTTCAAATAAGGCACAGGGTCATTTC10600.11617851596194166No Hit
AGTGAGAAGCGAACTGATTGGCTAGTTCAAATAAGGCACAGGGTCATTTC9680.10609509759543354No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)