FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001132676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001132676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138
Sequences flagged as poor quality0
Sequence length151
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAC107.246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGT96.521739130434782No Hit
CTTCCCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT85.797101449275362Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAC64.3478260869565215No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACC53.6231884057971016No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATAC42.898550724637681No Hit
CTTACCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCAAAAG42.898550724637681No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGG42.898550724637681No Hit
CTTCNCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT42.898550724637681Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATAC32.1739130434782608No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCACGGCCCCAGAGATCGAAGT21.4492753623188406No Hit
CTTANCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT21.4492753623188406Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGC21.4492753623188406No Hit
CTTACCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACT21.4492753623188406Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGGGTCGAACC21.4492753623188406No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGAAAGCGGGTG10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTGGTCGAACC10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGCCCAAGT10.7246376811594203No Hit
CCTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAATA10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAACGGGGAT10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAATGT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCCAAAG10.7246376811594203No Hit
CTTCCCTGGGGGCTGACGGATCCAAGATCGGAAGAACACACGTCTGAACT10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (96% over 26bp)
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGCCCCCGTAGT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCCCCCC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGA10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGA10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAATAT10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCCAAATTCCCTGGCCCCATTAGGCACAGT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTAGTCCCTTGGCCCCAGACGTCCATAC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGGCTACAG10.7246376811594203No Hit
CTTANCTGAGGAGACGGATCCAAGATCGGAAGAGCACACGTCTGAACTCC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
ATTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCGGTAC10.7246376811594203No Hit
CTTANTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGTA10.7246376811594203No Hit
CTTCCCTGGGGCGACGGATCCAAGATCGGAAGAGCACACGTCTGAACTCC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
TCCCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACTCC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGCTGTCCAAGT10.7246376811594203No Hit
CTTCCCTGGGGGCTGGCGGATCCAAGATCGGAAGAGCACACGTCTGAACT10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTACCTGAGGAGACGGTGGACCAAGATCGGAAGAGCACACGTCTGAACT10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTANCTGAGGAGACGGTGCCCAGGGTTCCCTGGCCCCAGTAGAATATTT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGGCGTCAAAGT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGTGTTCCCTGGCCCCAGGGGTCGAACC10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCAGATCGGAAGAGCACACGTCTGAACTCC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAGAGT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGATCGGAAGAGCACACGTCTGAACTCC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTTGTCAATAT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTGGTTCCCTGGCCCCAGACGTCCCTAC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAGAT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCCGGCCCCAGAAGTAGAGAT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCACAC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCATAAT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGCCCAGGCAATGTAGCTGGTAAACGGC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCATGGTCCCTTGGCCCCAGACGTCCATAC10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCCAAAG10.7246376811594203No Hit
CTTACCTGAGGAGACGGCGACCAGGGTTCCCTGGCCCCCGTAGTCAAAAC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTGGTCAAACC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCACAGGAGACTGTGACAGTGACGGTGACC10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTTGCCCCAGACGTCCATGT10.7246376811594203No Hit
CTTANCTGAGGAGCCTGGCGGACCAGATCGGAAGAGCACACGTCTGAACT10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 26bp)
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTTGTGCCAGACGTCCATGT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCGAACT10.7246376811594203No Hit
CTTCNCTGGGGGCTGACGGACCAAGATCGGAAGAGCACACGTCTGAACTC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 27bp)
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGGGATAAC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATGC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGTAGTCCATGC10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCGTCC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCTTGTTCCTTTGCCCCAGATATCAAAAGC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAATAGTCATAGA10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCGTGGTCCCTTGGCCCCAGACGTCCATAA10.7246376811594203No Hit
CTTCCCTGGGGGCTGACGGATCCAAGATCGGAAGCACACGTCTGAACTCC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCTGGGTTCCCTGGCCCCAGTAGTCCAAAG10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCGTGGTCCTCTGGCCCCAGACGTCCATAC10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCCTCAG10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAACGG10.7246376811594203No Hit
CTTCCCTGGGGGCAGACGGAGCCAAGATCGGAAGAGCACACGGCTGAACT10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (96% over 26bp)
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAGCA10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTGCCCTGGCCCCAATACTGGAAGT10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCATTGTCCCTTGGCCCCAGATATCAAAAG10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAACC10.7246376811594203No Hit
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTCGTCAACCC10.7246376811594203No Hit
CTTCNCTGGGGGCGACGGATCCAAGATCGGAAGAGCACACGTCTGAACTC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (100% over 27bp)
CTTCCCTGGGGGCTGACGGATCCAAGATCGGAAGAGCACACGTCTGAACC10.7246376811594203Illumina Multiplexing PCR Primer 2.01 (96% over 25bp)
CTTANCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAATG10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTTCTCGAAGT10.7246376811594203No Hit
CTTACCTGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGTAGTCAAAGT10.7246376811594203No Hit

[FAIL]Adapter Content

Adapter graph