FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001146606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001146606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58548376
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA1243110.2123218584235368TruSeq Adapter, Index 19 (97% over 40bp)
CTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTGTCGATGATCAATGTGTCCTGC813800.1389961695948663No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA808500.13809093526351612TruSeq Adapter, Index 19 (97% over 40bp)
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGG792100.1352898328042438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)